RNA id: TU615764



Basic Information


Item Value
RNA id TU615764
length 299
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G543783
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73510642 ~ 73510940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGTACAGTACTGTTTGCCAGTGAAATGCAATCATTCGGGCAGCAGGGCATTTCTCAATGACTGTAGAAATGGTACAACATAGAGTAGAGTATTATTCTCTGAGAGATGTCTAGGAATAGACAGGTTTAGAAAGAGTGAAAAATGTCAATAGACAGGCTCCCATCAGCATTGTGTAATTGGTTCACAGTGTTTCAAGAGCAAACAGTGGATTGTGCCTGTAGCGATGCTGCTGTGCCCATGTTTACATGTCGCATCCGAGTTATAACACAATATTGGACACAGATGGGAACTATTGAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU615760 lncRNA upstream 5249 73505132 ~ 73505393 (+) True G543779
TU615754 lncRNA upstream 10462 73499965 ~ 73500180 (+) True G543773
TU615727 lncRNA upstream 25737 73484551 ~ 73484905 (+) True G543746
TU615717 lncRNA upstream 30504 73479914 ~ 73480138 (+) True G543736
TU615709 lncRNA upstream 38865 73471448 ~ 73471777 (+) True G543728
TU615791 lncRNA downstream 29598 73540538 ~ 73540746 (+) True G543810
TU615799 lncRNA downstream 36261 73547201 ~ 73547743 (+) True G543818
TU615801 lncRNA downstream 36936 73547876 ~ 73548204 (+) True G543820
TU615803 lncRNA downstream 51427 73562367 ~ 73562593 (+) True G543822
TU615872 lncRNA downstream 124026 73634966 ~ 73636604 (+) True G543890
XM_036979113.1 mRNA upstream 118393 73251288 ~ 73392249 (+) False LOC100136290
XM_021607596.2 mRNA downstream 105888 73616828 ~ 73634948 (+) True LOC110526546
XM_021607597.2 mRNA downstream 215187 73726127 ~ 73731840 (+) True LOC110526547
XM_036980936.1 mRNA downstream 222857 73733797 ~ 73741617 (+) False copb1
XM_021607600.2 mRNA downstream 222865 73733805 ~ 73741617 (+) False copb1
XM_021607599.2 mRNA downstream 222881 73733821 ~ 73741617 (+) True copb1
TU615384 other upstream 122955 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 365295 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 743791 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 843770 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 1358248 72151020 ~ 72152394 (+) True G542100
TU616612 other downstream 776838 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 1726860 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 1910921 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 2417288 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 3376492 76887432 ~ 77036313 (+) False LOC110526968

Expression Profile