RNA id: TU615791



Basic Information


Item Value
RNA id TU615791
length 209
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G543810
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73540538 ~ 73540746 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


acagagcctgggtgcgaacccagggactctgatggcacagctagcgctggagtacagcgcccttaaccactgcgccacccgggaggcccaatatctgaaactttgaacatcccacggagcaccattaaatccattattaaaaaattgaaagaatatggtaccacaacaaacctgccaagagagggccgcccaccaaaactcacggacca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU615764 lncRNA upstream 29598 73510642 ~ 73510940 (+) True G543783
TU615760 lncRNA upstream 35145 73505132 ~ 73505393 (+) True G543779
TU615754 lncRNA upstream 40358 73499965 ~ 73500180 (+) True G543773
TU615727 lncRNA upstream 55633 73484551 ~ 73484905 (+) True G543746
TU615717 lncRNA upstream 60400 73479914 ~ 73480138 (+) True G543736
TU615799 lncRNA downstream 6455 73547201 ~ 73547743 (+) True G543818
TU615801 lncRNA downstream 7130 73547876 ~ 73548204 (+) True G543820
TU615803 lncRNA downstream 21621 73562367 ~ 73562593 (+) True G543822
TU615872 lncRNA downstream 94220 73634966 ~ 73636604 (+) True G543890
TU615963 lncRNA downstream 184461 73725207 ~ 73725676 (+) True G543978
XM_036979113.1 mRNA upstream 148289 73251288 ~ 73392249 (+) False LOC100136290
XM_021607596.2 mRNA downstream 76082 73616828 ~ 73634948 (+) True LOC110526546
XM_021607597.2 mRNA downstream 185381 73726127 ~ 73731840 (+) True LOC110526547
XM_036980936.1 mRNA downstream 193051 73733797 ~ 73741617 (+) False copb1
XM_021607600.2 mRNA downstream 193059 73733805 ~ 73741617 (+) False copb1
XM_021607599.2 mRNA downstream 193075 73733821 ~ 73741617 (+) True copb1
TU615384 other upstream 152851 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 395191 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 773687 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 873666 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 1388144 72151020 ~ 72152394 (+) True G542100
TU616612 other downstream 747032 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 1697054 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 1881115 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 2387482 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 3346686 76887432 ~ 77036313 (+) False LOC110526968

Expression Profile