RNA id: TU615872


Basic Information

Item Value
RNA id TU615872
length 1639
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G543890
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73634966 ~ 73636604 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTATGACAGCtataaataacaaaaataatttcCCCCACAATTTTGATATGGTTGAACAGTTACAACAGACATACATATCTCAATGCTACATAAGGGTAACAGCCATTCATAGAGACTTTTATGACAAGAACAGTAGAGGACACTGTGGTTCGTGAGACTGCACAGTGACAAGCCAACAAACAAACTTTTACAACATAATGAGCCATAAAATGTGGGGGGAGGTGGTAGAGGCATCACAATTCACCATCAGAACTTAAGAGATGCAGTGTCGCTCAACCCGAACGGACTGAAGGGCCACGGTTAGGAGTCGTGAGCTCTCATACAACAACACCTGGGCTGGGCTTCACCAGCATCACTTTGAGCCTGCTGTCGGACATGGAGCTCAGAGAGACCTCTGGGTCCAACCATAGCAAGCCCAGTGTATGAGGGCCCAGAGGTTGGGCAGTGAGCAGGGACAGTTTGGCACTGGTTGGGTGGACTGAGTAGACAACACAAGAGTTGAGAGAGAAAGTGGTTATGATAAGGAGCAGGGAGATGCTGAACCCAAAAGAAAAACACCAAACCCCACAGTTCAACATCTGTAGTATCAGATAAAAACTCTGGAAACAGGATGAGAATTACAGGGTCTCACTGTACAATATGTCAGCTGTGTGTAGAAAACAGATGCATTCTGTTgattaattaaaaaatataatatatttatacaCTATATTTATATGCAGATATTATTTTTTTGTGCAGAGCTAAACACTTGTTTGGTAGTAAAATGTggacatttatatatatattttttgtctttAAATATACTAGCTTGAATTACACTGCCTACTTGAGAACTTCCTTCTCCAGACAAAATGACTTGATAGGGTGATAAGTGAGTTCGGCTTGCAGGTCTGCCATCTCTTTCATTAAACTCTTTTTCTAGTGGAATGCCTAGAGTTTttacagagagaaatatagaaCTATTAGTATTAAACCGTCTTATGGTACAGAGAATAAGACACTATAAAACCAAAACAAAGGTGAAACCCTGGATTACTTAAGTCCTGGCCTGGTTGTGGGTTTGGCAAAGATATATAGTTTTTGTCAAAACATCAGTGTCTGTAGAATGACTGAAATTACATGAAGAGGTTAGCTAGACAGAGTATGTGTAAAAACAATGCCAACAGCAATGCACTCAAAAACACCTTTACCTATACTGGTACATGAATAATCATGGGATTTTACTGTACAAAATGTTGCCTTGCTGCAAACAGGTCTTTTACAGTCAACTGACAATCAAGGATCCCAATTCTACAGTGAGGTCTTTAGAAGATCAAGCCAACGGCACTGCCTGCGGGGCAGCGGAGTTTGACAGAAACACAGGACATACTTTGCTCTATCACAGAGGAGCAGTTCAATTgcttgaatgtgtttgtttttcaaGTTGTTCATACAAAGCTTAAAAACTATTTCAATCACCGAGATTTTGTTTTAAAGTCAATTACTTAAATTCTTGCAAAATAATTATTCAACTTCACGAGAATCCTGAGTAACCGTGGAAAAAATAGATATAAATCAAAAGAAAAAAACATCCCTTCATTGGAACAGCACTCCATTGGAACAGCACTCCATTGGAACAGCACTCCATTGGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU615803 lncRNA upstream 72373 73562367 ~ 73562593 (+) True G543822
TU615801 lncRNA upstream 86762 73547876 ~ 73548204 (+) True G543820
TU615799 lncRNA upstream 87223 73547201 ~ 73547743 (+) True G543818
TU615791 lncRNA upstream 94220 73540538 ~ 73540746 (+) True G543810
TU615764 lncRNA upstream 124026 73510642 ~ 73510940 (+) True G543783
TU615963 lncRNA downstream 88603 73725207 ~ 73725676 (+) True G543978
TU615987 lncRNA downstream 134566 73771170 ~ 73771497 (+) True G543997
TU616003 lncRNA downstream 221721 73858325 ~ 73891981 (+) True tub
TU616308 lncRNA downstream 299123 73935727 ~ 73935939 (+) True G544292
TU616440 lncRNA downstream 398876 74035480 ~ 74035734 (+) True G544407
XM_021607596.2 mRNA upstream 18 73616828 ~ 73634948 (+) True LOC110526546
XM_036979113.1 mRNA upstream 242717 73251288 ~ 73392249 (+) False LOC100136290
XM_021607597.2 mRNA downstream 89523 73726127 ~ 73731840 (+) True LOC110526547
XM_036980936.1 mRNA downstream 97193 73733797 ~ 73741617 (+) False copb1
XM_021607600.2 mRNA downstream 97201 73733805 ~ 73741617 (+) False copb1
XM_021607599.2 mRNA downstream 97217 73733821 ~ 73741617 (+) True copb1
XM_021607601.2 mRNA downstream 108295 73744899 ~ 73789243 (+) False rras2
TU615384 other upstream 247279 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 489619 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 868115 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 968094 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 1482572 72151020 ~ 72152394 (+) True G542100
TU616612 other downstream 651174 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 1601196 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 1785257 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 2291624 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 3250828 76887432 ~ 77036313 (+) False LOC110526968

Expression Profile