RNA id: TU616440


Basic Information

Item Value
RNA id TU616440
length 255
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G544407
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74035480 ~ 74035734 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTgcagtcatctctcctccttccaggctttttcttctttggactttatatggcgattggcatctGACTTTCATAATAAGGTGTATTACCACAACCAACCGACAAAAcatcagttcatctttcaatcacccatgtgggtataaccaatgaggagatggcacgtgggtatatgcttctataaaccaatgaggagataggagaggcaggacttgcacctCGTTCAGCGTTCTATTTTAGCACTTGGCAACGCAGATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU616308 lncRNA upstream 99541 73935727 ~ 73935939 (+) True G544292
TU616003 lncRNA upstream 143499 73858325 ~ 73891981 (+) True tub
TU615987 lncRNA upstream 263983 73771170 ~ 73771497 (+) True G543997
TU615963 lncRNA upstream 309804 73725207 ~ 73725676 (+) True G543978
TU615872 lncRNA upstream 398876 73634966 ~ 73636604 (+) True G543890
TU616456 lncRNA downstream 25131 74060865 ~ 74061122 (+) True G544423
TU616457 lncRNA downstream 26959 74062693 ~ 74063015 (+) True G544424
TU616460 lncRNA downstream 35927 74071661 ~ 74071882 (+) True G544427
TU616530 lncRNA downstream 129432 74165166 ~ 74166823 (+) True G544490
TU616535 lncRNA downstream 135941 74171675 ~ 74188595 (+) True G544495
XM_021607604.2 mRNA upstream 143702 73793635 ~ 73891778 (+) False tub
XM_036980938.1 mRNA upstream 143702 73793635 ~ 73891778 (+) False tub
XM_021607606.2 mRNA upstream 143702 73793637 ~ 73891778 (+) False tub
XM_021607605.2 mRNA upstream 143702 73844722 ~ 73891778 (+) False tub
XM_036980937.1 mRNA upstream 246237 73779510 ~ 73789243 (+) True rras2
XR_005052431.1 mRNA downstream 273306 74309040 ~ 74309094 (+) True LOC118965098
XR_005052432.1 mRNA downstream 275607 74311341 ~ 74311395 (+) True LOC118965099
XR_005052433.1 mRNA downstream 277902 74313636 ~ 74313690 (+) True LOC118965100
XR_005052434.1 mRNA downstream 280167 74315901 ~ 74315955 (+) True LOC118965101
XR_005052435.1 mRNA downstream 282467 74318201 ~ 74318255 (+) True LOC118965102
TU615384 other upstream 647793 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 890133 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 1268629 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 1368608 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 1883086 72151020 ~ 72152394 (+) True G542100
TU616612 other downstream 252044 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 1202066 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 1386127 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 1892494 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 2851698 76887432 ~ 77036313 (+) False LOC110526968

Expression Profile