RNA id: TU616456


Basic Information

Item Value
RNA id TU616456
length 258
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G544423
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74060865 ~ 74061122 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCTGGCCTGCTCAGTGGACCCattgatcactcggctacacagctgatgcctccaGGACTCTTCACTAACACGACTAAAAGCCACTACATCGCCGGATTCCTGctgtaagctctggacctttgcatcAGATCATCGCAACTAGCTAACTGCTACCgggtggctatagtggctaacgcccttgTACCGAAGCTAGCACCAATTAGCctcgagccaggcgcatctcccggctagcaaacgaaattactccagctacaat

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU616440 lncRNA upstream 25131 74035480 ~ 74035734 (+) True G544407
TU616308 lncRNA upstream 124926 73935727 ~ 73935939 (+) True G544292
TU616003 lncRNA upstream 168884 73858325 ~ 73891981 (+) True tub
TU615987 lncRNA upstream 289368 73771170 ~ 73771497 (+) True G543997
TU615963 lncRNA upstream 335189 73725207 ~ 73725676 (+) True G543978
TU616457 lncRNA downstream 1571 74062693 ~ 74063015 (+) True G544424
TU616460 lncRNA downstream 10539 74071661 ~ 74071882 (+) True G544427
TU616530 lncRNA downstream 104044 74165166 ~ 74166823 (+) True G544490
TU616535 lncRNA downstream 110553 74171675 ~ 74188595 (+) True G544495
TU616533 lncRNA downstream 121281 74182403 ~ 74182729 (+) True G544493
XM_021607604.2 mRNA upstream 169087 73793635 ~ 73891778 (+) False tub
XM_036980938.1 mRNA upstream 169087 73793635 ~ 73891778 (+) False tub
XM_021607606.2 mRNA upstream 169087 73793637 ~ 73891778 (+) False tub
XM_021607605.2 mRNA upstream 169087 73844722 ~ 73891778 (+) False tub
XM_036980937.1 mRNA upstream 271622 73779510 ~ 73789243 (+) True rras2
XR_005052431.1 mRNA downstream 247918 74309040 ~ 74309094 (+) True LOC118965098
XR_005052432.1 mRNA downstream 250219 74311341 ~ 74311395 (+) True LOC118965099
XR_005052433.1 mRNA downstream 252514 74313636 ~ 74313690 (+) True LOC118965100
XR_005052434.1 mRNA downstream 254779 74315901 ~ 74315955 (+) True LOC118965101
XR_005052435.1 mRNA downstream 257079 74318201 ~ 74318255 (+) True LOC118965102
TU615384 other upstream 673178 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 915518 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 1294014 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 1393993 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 1908471 72151020 ~ 72152394 (+) True G542100
TU616612 other downstream 226656 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 1176678 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 1360739 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 1867106 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 2826310 76887432 ~ 77036313 (+) False LOC110526968

Expression Profile