RNA id: TCONS_00033923


Basic Information

Item Value
RNA id TCONS_00033923
length 277
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id XLOC_016755
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42981204 ~ 42986970 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAAGAACAGCTGCTGATGGTGTTCATCCTATGAATGTTTTGTTGTGATAAATGGGCATAGTTCACAGAATGGCTGAACTCAATCACTGGATTAGCATCAGAATCTGCGCTGTCACTTTATCTCTGTTTCTTATTCATACACAAGttccaaGACAAGGCCAGTCGATGCAAACCGAGAAACGAGAGCTCCTGGTGTCCACAGAGATCCCAGCAGAGCACATCGACCCTGCTTCCATAGATCTTACTGGACTCGTCAACACACTCATCAACGCTTCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033398 lncRNA downstream 4277 42962862 ~ 42978612 (-) True XLOC_016754
TCONS_00033397 lncRNA downstream 46651 42935881 ~ 42936238 (-) True XLOC_016751
TCONS_00033922 lncRNA downstream 210911 42756891 ~ 42771978 (-) False XLOC_016749
TCONS_00033921 lncRNA downstream 211018 42719037 ~ 42771871 (-) False XLOC_016749
TCONS_00033924 lncRNA upstream 391132 43378102 ~ 43379093 (-) True XLOC_016763
TCONS_00032871 lncRNA upstream 522532 43509502 ~ 43517018 (-) True XLOC_016764
TCONS_00033925 lncRNA upstream 580175 43567145 ~ 43571656 (-) False XLOC_016766
TCONS_00033926 lncRNA upstream 581104 43568074 ~ 43571670 (-) False XLOC_016766
TCONS_00033927 lncRNA upstream 582716 43569686 ~ 43571760 (-) True XLOC_016766
TCONS_00032853 mRNA downstream 22536 42942552 ~ 42960353 (-) False XLOC_016752
TCONS_00032855 mRNA downstream 24270 42953369 ~ 42958619 (-) True XLOC_016752
TCONS_00032854 mRNA downstream 24776 42953266 ~ 42958113 (-) False XLOC_016752
TCONS_00032850 mRNA downstream 111603 42776224 ~ 42871286 (-) False XLOC_016750
TCONS_00032849 mRNA downstream 118417 42776224 ~ 42864472 (-) False XLOC_016750
TCONS_00032857 mRNA upstream 14542 43001512 ~ 43010396 (-) True XLOC_016756
TCONS_00032858 mRNA upstream 27409 43014379 ~ 43083749 (-) False XLOC_016757
TCONS_00032859 mRNA upstream 30325 43017295 ~ 43083755 (-) True XLOC_016757
TCONS_00032861 mRNA upstream 111267 43098237 ~ 43123949 (-) False XLOC_016758
TCONS_00032860 mRNA upstream 111267 43098237 ~ 43123949 (-) False XLOC_016758
TCONS_00032856 other downstream 20545 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032848 other downstream 277956 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032837 other downstream 567101 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032833 other downstream 607780 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032811 other downstream 1035993 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032894 other upstream 1205829 44192799 ~ 44199697 (-) False XLOC_016779
TCONS_00032911 other upstream 1535886 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032916 other upstream 1771079 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032917 other upstream 1776112 44763082 ~ 44763375 (-) True XLOC_016791
TCONS_00032918 other upstream 1787305 44774275 ~ 44774595 (-) True XLOC_016792

Expression Profile

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