RNA id: TU616607


Basic Information

Item Value
RNA id TU616607
length 491
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G544560
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74282430 ~ 74282920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATTGTAAATGTTTAATAGGTGATTGTACTATGACGTTTGGATCTGTCAAAAGAGCTCATGTATTATACATGCATAGTTTTCAGACATCAGGTTGATTCATGTGTGTGAGACTGAGTGGGACATTCCAATAAAAACTAGTGAGGATTTATGAGGAGACTGACTTAAAGAGAATGGGGTATTATCCCAATTACTGAAGCAGAGGCTCTTACAAAAAGTACACATGTTGTGTTTAGCTTGATTTGCCAGTTGTATACTAGGTCCTTGTTGTTTTGCTCACTTTGTAAGTTCATGGTCAGACAGCAGCTTTTTGAGGTGCCTGGACAGTAGCTTCTTCTCCATGGAGAGCCTCACCCAGGCCCTGGCCTTGCCCACGTCTGTCTTGATCTCCCCAATGTTCTGGATGTGTCTACGGAGGATATAGTACACAGCACAGAGGTCAGAGGAGAAaaacatacacaaatacacacatatacaaacagtCATCCTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU616605 lncRNA upstream 110 74281713 ~ 74282320 (+) True G544559
TU616598 lncRNA upstream 10220 74271810 ~ 74272210 (+) True G544554
TU616563 lncRNA upstream 36682 74245023 ~ 74245748 (+) True G544519
TU616532 lncRNA upstream 76559 74204635 ~ 74205871 (+) True G544492
TU616535 lncRNA upstream 93835 74171675 ~ 74188595 (+) True G544495
TU616610 lncRNA downstream 3661 74286581 ~ 74286851 (+) True G544563
TU616611 lncRNA downstream 4407 74287327 ~ 74287667 (+) True G544564
TU616614 lncRNA downstream 8058 74290978 ~ 74291200 (+) True G544567
TU616615 lncRNA downstream 8466 74291386 ~ 74291658 (+) True G544568
TU616616 lncRNA downstream 10027 74292947 ~ 74293257 (+) True G544569
XM_021607604.2 mRNA upstream 390652 73793635 ~ 73891778 (+) False tub
XM_036980938.1 mRNA upstream 390652 73793635 ~ 73891778 (+) False tub
XM_021607606.2 mRNA upstream 390652 73793637 ~ 73891778 (+) False tub
XM_021607605.2 mRNA upstream 390652 73844722 ~ 73891778 (+) False tub
XM_036980937.1 mRNA upstream 493187 73779510 ~ 73789243 (+) True rras2
XR_005052431.1 mRNA downstream 26120 74309040 ~ 74309094 (+) True LOC118965098
XR_005052432.1 mRNA downstream 28421 74311341 ~ 74311395 (+) True LOC118965099
XR_005052433.1 mRNA downstream 30716 74313636 ~ 74313690 (+) True LOC118965100
XR_005052434.1 mRNA downstream 32981 74315901 ~ 74315955 (+) True LOC118965101
XR_005052435.1 mRNA downstream 35281 74318201 ~ 74318255 (+) True LOC118965102
TU615384 other upstream 894743 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 1137083 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 1515579 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 1615558 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 2130036 72151020 ~ 72152394 (+) True G542100
TU616612 other downstream 4858 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 954880 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 1138941 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 1645308 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 2604512 76887432 ~ 77036313 (+) False LOC110526968

Expression Profile