RNA id: TU616619


Basic Information

Item Value
RNA id TU616619
length 257
lncRNA type antisense_over
GC content 0.54
exon number 1
gene id G544571
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74295358 ~ 74295852 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGGGGCAGCTCTAGTTTGGTGCGGTCACCCTCTCCGTTGGAGTGTAGGCCCATCAGGTAGGGCACTGGGGCATCCAGGAAGTGCAGCAGTGAGGCGGGCAGGATGGGCACATAGACATGCTGCCACTGGAAAGGGAACATTAAGGCTGTGATGCTCTCGGCCACAGTCATCAGCCTCTGGTAGTCTGTCACACAAACAACAGAGGAGAGAGTCACAAACTGACTGGTTTTATATGGTCACAAAGGCTAAATGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU616616 lncRNA upstream 2101 74292947 ~ 74293257 (+) True G544569
TU616615 lncRNA upstream 3700 74291386 ~ 74291658 (+) True G544568
TU616614 lncRNA upstream 4158 74290978 ~ 74291200 (+) True G544567
TU616611 lncRNA upstream 7691 74287327 ~ 74287667 (+) True G544564
TU616610 lncRNA upstream 8507 74286581 ~ 74286851 (+) True G544563
TU616565 lncRNA downstream 3265 74298879 ~ 74299518 (+) True G544521
TU616630 lncRNA downstream 18728 74314342 ~ 74316857 (+) True G544580
TU616636 lncRNA downstream 29296 74324910 ~ 74325244 (+) True G544586
TU616643 lncRNA downstream 37988 74333602 ~ 74333932 (+) False G544591
TU616641 lncRNA downstream 38034 74333648 ~ 74333892 (+) False G544591
XM_021607604.2 mRNA upstream 403580 73793635 ~ 73891778 (+) False tub
XM_036980938.1 mRNA upstream 403580 73793635 ~ 73891778 (+) False tub
XM_021607606.2 mRNA upstream 403580 73793637 ~ 73891778 (+) False tub
XM_021607605.2 mRNA upstream 403580 73844722 ~ 73891778 (+) False tub
XM_036980937.1 mRNA upstream 506115 73779510 ~ 73789243 (+) True rras2
XR_005052431.1 mRNA downstream 13426 74309040 ~ 74309094 (+) True LOC118965098
XR_005052432.1 mRNA downstream 15727 74311341 ~ 74311395 (+) True LOC118965099
XR_005052433.1 mRNA downstream 18022 74313636 ~ 74313690 (+) True LOC118965100
XR_005052434.1 mRNA downstream 20287 74315901 ~ 74315955 (+) True LOC118965101
XR_005052435.1 mRNA downstream 22587 74318201 ~ 74318255 (+) True LOC118965102
TU616612 other upstream 7220 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 907671 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 1150011 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 1528507 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 1628486 72665460 ~ 72666872 (+) True saa
TU617662 other downstream 942186 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 1126247 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 1632614 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 2591818 76887432 ~ 77036313 (+) False LOC110526968
TU620306 other downstream 2982378 77277992 ~ 77279354 (+) True G547884

Expression Profile