RNA id: TCONS_00032859


Basic Information

Item Value
RNA id TCONS_00032859
length 1354
RNA type mRNA
GC content 0.56
exon number 9
gene id XLOC_016757
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 43014379 ~ 43083755 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCATCAGCAATCATGCGGTCGCGCGGAGAACACGCCCTTCCTCGCGCCTCCCTCTCTGAACGAGGTCCTTAAATGACCCACGACCACTAAGAAGCTCGTGCTTTCCCTGTCCGGATCATGGCATGCGCCCCATCCCGGACTTCCACACGCGCGGCGCCGAGGCTCGAGAGCAGTGAACATGGGGATCAGGTCCAGAAATGCCGCTAACAGCGCCGAGGACTCGCGCGAGCGTAAAAGCGCGCTGGCCGGAGACCTGGAGCAGTGCGCGGGGCAGGAACGGGACGGCGCGCTGCTGCTCGTCGGCTCGGGGAGGGAAGTGGACTTCAAAAGGGGCTCGCAGAACATCGGGCTGCTCGCCAAGACGCCCCTGGGATACACGCGCCCCGTGAAGAGGAATAATATCAGGAAGCGACGGATCCAGAACCTCATTTACGACGCGCTCGAGAGACCACGAGGATGGGCGCTGCTCTACCACGCGTTTGTGTTTCTGATTGTTTTGGGATGTCTGATTCTGTCGATATTAACAACATTCAAAGAGCACGAGAAGGATTCGGCTCACTGGCTGGTGATTctgGAGACGTTTACCATCTTTATTTTTGGAGGTGAGTTTGCGTTGAGGATATGGGCCGCCGGCTGCTGCTGTCGATATAAAGGCTGGAGAGGACGGCTCAAATTCGCCCGCAAACCGCTGTGTGTCCTGGATATTTTTGTTCTGATCGCTTCGGTGCCGGTGGTTGCCGTACGTAATCAGGGAAATGTGTTGGCCACGTCGCTGCGCAGTCTGCGTTTCCTGCAGATCCTCCGGATGCTGCGAATGGACAGACGCGGAGGAACCTGGAAACTGCTGGGATCTGCAATATACACACACAGCAAGGAGCTGATCACAGCGTGGTACATCGGCTTCCTGTCATTGATCCTGGCTTCTTTCCTGGTGTATCTGGTCGAGAAGGACGATGAGACCACAGAGCTCCACAGAGACACTGATGGCCCTTCACCGACACCGGCCCCGCAGGACTTTGACACCTATGCAGACGCCCTCTGGTGGGGACTGATCACTTTGACCACCATCGGTTACGGTGACAAGACCCCAAAGACATGGGCAGGGCGTCTTCTGGCCGGGACCTTCGCTCTTATTGGCGTATCATTCTTTGCACTTCCAGCCGGCATTCTTGGTTCAGGTCTGGCTCTGAAAGTTCAGGAACAGCACAGACAGAAACACTTTGAGAAACGCAGACATCCCGCAGCTTCATTAATACAGGCTGCATGGAGATATTACTCCACCAACCCCGTCAGAGAAGATCTCATCGCCACATGGAGATTCTATGAGACTGTGATCTCTCTGCCATGCTTCAG

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0043194 axon initial segment cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function
GO:0005251 delayed rectifier potassium channel activity molecular_function
GO:0005267 potassium channel activity molecular_function

KEGG:

id description
ko04725 Cholinergic synapse
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-070912-301 Predicted to enable calmodulin binding activity and delayed rectifier potassium channel activity. Acts upstream of or within chemical synaptic transmission. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in axon initial segment. Predicted to be integral component of membrane. Is expressed in central nervous system; heart; and inner ear. Human ortholog(s) of this gene implicated in autistic disorder and benign neonatal seizures. Orthologous to human KCNQ3 (potassium voltage-gated channel subfamily Q member 3).

Ensembl:

ensembl_id ENSDART00000145494

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033923 lncRNA downstream 30325 42982889 ~ 42986970 (-) True XLOC_016755
TCONS_00033400 lncRNA downstream 34285 42981204 ~ 42983010 (-) False XLOC_016755
TCONS_00033399 lncRNA downstream 34285 42981204 ~ 42983010 (-) False XLOC_016755
TCONS_00033398 lncRNA downstream 38683 42962862 ~ 42978612 (-) True XLOC_016754
TCONS_00033397 lncRNA downstream 81057 42935881 ~ 42936238 (-) True XLOC_016751
TCONS_00033924 lncRNA upstream 294347 43378102 ~ 43379093 (-) True XLOC_016763
TCONS_00032871 lncRNA upstream 425747 43509502 ~ 43517018 (-) True XLOC_016764
TCONS_00033925 lncRNA upstream 483390 43567145 ~ 43571656 (-) False XLOC_016766
TCONS_00033926 lncRNA upstream 484319 43568074 ~ 43571670 (-) False XLOC_016766
TCONS_00033927 lncRNA upstream 485931 43569686 ~ 43571760 (-) True XLOC_016766
TCONS_00032857 mRNA downstream 6899 43001512 ~ 43010396 (-) True XLOC_016756
TCONS_00032853 mRNA downstream 56942 42942552 ~ 42960353 (-) False XLOC_016752
TCONS_00032855 mRNA downstream 58676 42953369 ~ 42958619 (-) True XLOC_016752
TCONS_00032854 mRNA downstream 59182 42953266 ~ 42958113 (-) False XLOC_016752
TCONS_00032852 mRNA downstream 173498 42815227 ~ 42843797 (-) True XLOC_016750
TCONS_00032861 mRNA upstream 14482 43098237 ~ 43123949 (-) False XLOC_016758
TCONS_00032860 mRNA upstream 14482 43098237 ~ 43123949 (-) False XLOC_016758
TCONS_00032862 mRNA upstream 14849 43098604 ~ 43124747 (-) True XLOC_016758
TCONS_00032863 mRNA upstream 44607 43128362 ~ 43130812 (-) False XLOC_016759
TCONS_00032864 mRNA upstream 45565 43129320 ~ 43130930 (-) True XLOC_016759
TCONS_00032856 other downstream 54951 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032848 other downstream 312362 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032837 other downstream 601507 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032833 other downstream 642186 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032811 other downstream 1070399 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032894 other upstream 1109044 44192799 ~ 44199697 (-) False XLOC_016779
TCONS_00032911 other upstream 1439101 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032916 other upstream 1674294 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032917 other upstream 1679327 44763082 ~ 44763375 (-) True XLOC_016791
TCONS_00032918 other upstream 1690520 44774275 ~ 44774595 (-) True XLOC_016792

Expression Profile

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