RNA id: TCONS_00032861


Basic Information

Item Value
RNA id TCONS_00032861
length 1791
RNA type mRNA
GC content 0.47
exon number 13
gene id XLOC_016758
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 43098237 ~ 43124747 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGATAGTTGCCAGGAATACATGACATTGGATGCGATTTTAAGGAGCGTCTGAAGTGAGTCTGTTTCTGTAGCAACGTCTAACAAACTAGACCAGCAAGTCATGGTCCGCATCAGTGAGGATCTGATCCGCCGCAGAGCAGAGCACAATAACGGAGAGATCTTCTCCCTTGAGGAGCTTTCCCTTCATCAGCAGGACATCCAGAGAATCGAGCACATCCACAAGTGGTGCAGAGACCTCAAAATcctttatttacaaaacaacCTCATCCCTAAAATAGAAAATGTCGGCAGGCTAAAGAAGCTGGAATATTTAAATCTGGCACTGAACAACATTGAGGTCATTGAGAATTTGGAAGGTTGCGAGAGCTTACAGAAACTAGACCTGACAGTGAATTTTGTGGGTAGGCTGAGCAGTGTGGAGACGCTGAAGCACAACCTTCATCTCAAAGAGCTCTATCTGGTGGGAAACCCCTGTGCTGAATACCACGGGTACAGACAGTATGTGGTGGCAACAGTGCCTCAACTACAGTCGTTGGATGGGAAAGAAATTAGCCGAGCTGAGCGTATCCAGGCCCTGCAGGAACTGGATGCAGTGAGGACACGTGTCTTACAGCAGGAAACAGAGTATTTAGAGGAAAGAGAGAAGCAGAAGAGCAATGCGAATGAGCATCCTGAAATAAACCAATCGCTCTCTGAGAGCCAAAATGGAACCCAACAGTATCCAGAATCAAGCTCCAAGACTCACACAGAGGCAGAGGACGAGGAGAGGGAATTCTGGGAGAAGCCGTGCCCATTCACACCAGAGTCCAGACTAGAGGCCCATCGCCATCTGGAGGAGAAGAGGAGAGCCAATGAGAAAGAGAAAGAGAAGCCAAAAACCAAAACTCCAAGAACACTGATCACTCCAGACGGACGTGTGCTGAATGTCAACGAGCCTAAGTTGGACTTTAGTCTTTCTGAAGATGAAAACAACTGCCTGCTTCTGGATTTAAATGTTTACAGGCATATGGACTCTTCGCTGCTGGATGTGGATGTTCAGCCAATGTATGTGAGAGTGACCGTCAAAGGAAAGgTGTTCCAGTTAGTTTTGCCTGCAGAAGTGAAACCTGACAGCAGCTCAGCACAGAGATCCCAAACCACCGGCCACCTGCTCCTCATCCTGCCTCTGGCAAATGAAGATGTAAAACCAAAGAAACGCTCCATAAGGCCGACCAGTGTTACCAGTAACCAGAATAACAAGAAGGACACCAGGGCAGCGCCGAGGCGTGAATTATTGGAGGTGGATCCTGGTTTGGCTGGGAGTCTGGCCAACATTGTTCCCAAAGGACAGGAGTCTTCCCACAATCCCCAGCGCTGTGGCTTGGAGGAAAGGCCTGTGTCGAAGGACTTTGTGGACGATCCAGAAGTGCCTCCACTTGTGTGAGcgaaacacacagagaaagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaatatgcTTGATATGACACAGCAAGAGAGCATAAGCATAATCACACTCTCTGCTGAGCttgtggaagtgtgtgtgtgtgcgcaatgaAATAATGCAAGATATATTTAGCTGTCTTGGTTAGACGTATAGTTGAGCTGATGAGTAATTGAAAGGCTCATTAAAGCTGGCTGATGAATATTTCACCGCTGTAGATCCTTCACTTTCAATgttctctgtcacacacacagacattcatTTATTGATAAACAGTCATGTCTGTTTGTTTTAATGGTTTAATGTCAGATGTTGGc

Function

GO:

id name namespace
GO:0003351 epithelial cilium movement involved in extracellular fluid movement biological_process
GO:0048793 pronephros development biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0003146 heart jogging biological_process
GO:0044458 motile cilium assembly biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0060271 cilium assembly biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0060294 cilium movement involved in cell motility biological_process
GO:0001947 heart looping biological_process
GO:0042995 cell projection cellular_component
GO:0005929 cilium cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-040827-2 Acts upstream of or within several processes, including cilium movement involved in cell motility; embryonic morphogenesis; and motile cilium assembly. Located in cytoplasm. Is expressed in several structures, including floor plate; forerunner cell group; olfactory pit; pronephros; and tail bud. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 19. Orthologous to human DNAAF11 (dynein axonemal assembly factor 11).

Ensembl:

ensembl_id ENSDART00000132346

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033923 lncRNA downstream 111267 42982889 ~ 42986970 (-) True XLOC_016755
TCONS_00033400 lncRNA downstream 115227 42981204 ~ 42983010 (-) False XLOC_016755
TCONS_00033399 lncRNA downstream 115227 42981204 ~ 42983010 (-) False XLOC_016755
TCONS_00033398 lncRNA downstream 119625 42962862 ~ 42978612 (-) True XLOC_016754
TCONS_00033397 lncRNA downstream 161999 42935881 ~ 42936238 (-) True XLOC_016751
TCONS_00033924 lncRNA upstream 254153 43378102 ~ 43379093 (-) True XLOC_016763
TCONS_00032871 lncRNA upstream 385553 43509502 ~ 43517018 (-) True XLOC_016764
TCONS_00033925 lncRNA upstream 443196 43567145 ~ 43571656 (-) False XLOC_016766
TCONS_00033926 lncRNA upstream 444125 43568074 ~ 43571670 (-) False XLOC_016766
TCONS_00033927 lncRNA upstream 445737 43569686 ~ 43571760 (-) True XLOC_016766
TCONS_00032859 mRNA downstream 14482 43017295 ~ 43083755 (-) True XLOC_016757
TCONS_00032858 mRNA downstream 14488 43014379 ~ 43083749 (-) False XLOC_016757
TCONS_00032857 mRNA downstream 87841 43001512 ~ 43010396 (-) True XLOC_016756
TCONS_00032853 mRNA downstream 137884 42942552 ~ 42960353 (-) False XLOC_016752
TCONS_00032855 mRNA downstream 139618 42953369 ~ 42958619 (-) True XLOC_016752
TCONS_00032863 mRNA upstream 4413 43128362 ~ 43130812 (-) False XLOC_016759
TCONS_00032864 mRNA upstream 5371 43129320 ~ 43130930 (-) True XLOC_016759
TCONS_00032865 mRNA upstream 7198 43131147 ~ 43135700 (-) True XLOC_016760
TCONS_00032866 mRNA upstream 20989 43144938 ~ 43151358 (-) False XLOC_016761
TCONS_00032867 mRNA upstream 25920 43149869 ~ 43151358 (-) True XLOC_016761
TCONS_00032856 other downstream 135893 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032848 other downstream 393304 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032837 other downstream 682449 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032833 other downstream 723128 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032811 other downstream 1151341 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032894 other upstream 1068850 44192799 ~ 44199697 (-) False XLOC_016779
TCONS_00032911 other upstream 1398907 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032916 other upstream 1634100 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032917 other upstream 1639133 44763082 ~ 44763375 (-) True XLOC_016791
TCONS_00032918 other upstream 1650326 44774275 ~ 44774595 (-) True XLOC_016792

Expression Profile

//