RNA id: TU617647



Basic Information


Item Value
RNA id TU617647
length 280
lncRNA type intronic
GC content 0.44
exon number 1
gene id G545470
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75217338 ~ 75217617 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caggaaCCAGCAAACAGAAATAAAGAAGCTACTCAGGAAAGAGTAAAGGATGACCAGATACTGAACACATTACTGAACACATCCCAGACAGAAATGGCCTAATTGGGGAGAACAAAGTAGGCTAGCGTAATGGTAGCCAACATTAGAGAACTATAGAGCATCGTACTGTGGTACTAATAGATCCTGACTTCACAGGGTAATGGGAGGCAAACTATAGGCACACAAGTAGATCCCAGAGCACCACACTCTACCCATCTACCCAGAACTGTCAGTGTTTTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU617641 lncRNA upstream 10696 75206283 ~ 75206642 (+) True G545464
TU617637 lncRNA upstream 12435 75202469 ~ 75204903 (+) True G545462
TU617635 lncRNA upstream 17263 75199711 ~ 75200075 (+) False G545462
TU617632 lncRNA upstream 18809 75198306 ~ 75198529 (+) True G545460
TU617629 lncRNA upstream 27156 75189719 ~ 75190182 (+) True G545457
TU617655 lncRNA downstream 11071 75228688 ~ 75228927 (+) True G545478
TU617656 lncRNA downstream 12449 75230066 ~ 75230364 (+) True G545479
TU617658 lncRNA downstream 14239 75231856 ~ 75232202 (+) True G545481
TU617674 lncRNA downstream 28199 75245816 ~ 75246243 (+) True G545494
TU617684 lncRNA downstream 37757 75255374 ~ 75255580 (+) True G545504
XM_021607678.2 mRNA upstream 22648 75168569 ~ 75194690 (+) False LOC110526583
XM_021607679.2 mRNA downstream 98888 75316505 ~ 75324636 (+) False LOC110526584
XM_021607680.2 mRNA downstream 98888 75316505 ~ 75324636 (+) True LOC110526584
XM_021607687.2 mRNA downstream 176180 75393797 ~ 75408675 (+) False LOC110526588
XR_005052239.1 mRNA downstream 176180 75393797 ~ 75408675 (+) True LOC110526588
XM_021607689.2 mRNA downstream 237370 75454987 ~ 75456513 (+) True LOC110526592
TU616612 other upstream 929200 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 1829651 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 2071991 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 2450487 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 2550466 72665460 ~ 72666872 (+) True saa
TU617662 other downstream 20183 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 204244 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 710611 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 1669815 76887432 ~ 77036313 (+) False LOC110526968
TU620306 other downstream 2060375 77277992 ~ 77279354 (+) True G547884

Expression Profile