RNA id: TU617662



Basic Information


Item Value
RNA id TU617662
length 365
RNA type TUCP
GC content 0.42
exon number 1
gene id G545485
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75237800 ~ 75238164 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaatttgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacattgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgggaaaaaatttcagt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU617658 lncRNA upstream 5598 75231856 ~ 75232202 (+) True G545481
TU617656 lncRNA upstream 7436 75230066 ~ 75230364 (+) True G545479
TU617655 lncRNA upstream 8873 75228688 ~ 75228927 (+) True G545478
TU617647 lncRNA upstream 20183 75217338 ~ 75217617 (+) True G545470
TU617641 lncRNA upstream 31158 75206283 ~ 75206642 (+) True G545464
TU617674 lncRNA downstream 7652 75245816 ~ 75246243 (+) True G545494
TU617684 lncRNA downstream 17210 75255374 ~ 75255580 (+) True G545504
TU617686 lncRNA downstream 18838 75257002 ~ 75257228 (+) True G545506
TU617672 lncRNA downstream 96846 75335010 ~ 75337018 (+) True G545492
TU617794 lncRNA downstream 180885 75419049 ~ 75490051 (+) True G545600
XM_036980973.1 mRNA upstream 43110 75168568 ~ 75194690 (+) False LOC110526583
XM_021607678.2 mRNA upstream 43110 75168569 ~ 75194690 (+) False LOC110526583
XM_036980972.1 mRNA upstream 43110 75168832 ~ 75194690 (+) False LOC110526583
XM_021607677.2 mRNA upstream 43110 75168834 ~ 75194690 (+) False LOC110526583
XM_021607673.2 mRNA upstream 43110 75169446 ~ 75194690 (+) False LOC110526583
XM_021607679.2 mRNA downstream 78341 75316505 ~ 75324636 (+) False LOC110526584
XM_021607680.2 mRNA downstream 78341 75316505 ~ 75324636 (+) True LOC110526584
XM_021607687.2 mRNA downstream 155633 75393797 ~ 75408675 (+) False LOC110526588
XR_005052239.1 mRNA downstream 155633 75393797 ~ 75408675 (+) True LOC110526588
XM_021607689.2 mRNA downstream 216823 75454987 ~ 75456513 (+) True LOC110526592
TU616612 other upstream 949662 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 1850113 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 2092453 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 2470949 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 2570928 72665460 ~ 72666872 (+) True saa
TU617795 other downstream 183697 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 690064 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 1649268 76887432 ~ 77036313 (+) False LOC110526968
TU620306 other downstream 2039828 77277992 ~ 77279354 (+) True G547884
TU620456 other downstream 2274445 77512609 ~ 77523423 (+) True G548000

Expression Profile