RNA id: TCONS_00032865


Basic Information

Item Value
RNA id TCONS_00032865
length 2490
RNA type mRNA
GC content 0.41
exon number 6
gene id XLOC_016760
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 43131147 ~ 43135700 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATGACTGGCTGATTCGTTTTTCACAAACAGGAAGTGATTCCTCTAAGAAAAATCGAAACTTAAGCTGTTGTCGAAATGTTGAGTATTCTCTTCTGTCTGTGAGTTTGTGCTGTAAAATGGCAGAATCCAGTATTTCAGTGGCTCAGGATCAGTTCAGCTGTTCAATCTGTCTGGATCTACTGAAGGGTCCAGTAACTATTCCCTGTGGACACAGTTACTGTATGAGCTGTATTTTAGACTGCTGGGATCAGGATGAGCAGAAGGGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCACTCCAAGACCTGCTTTAGGGAAAAACACCATGCTGGCTGAAGTGGTGGAGAAACTCAAGAAGACCAAACTACAAGCTGCTCGTCCTGCTCAGTGTTACTCTGAATCTGCAGATGTGGAATGTGATGTTTGTACTGGAGACAAAAACAAAGCTATCAAATCCTGTCTGGTGTGTCTGAACTCTTACTGCCAAAATCATCTTGAACAACACGAGAGTTTCTTCAGAGGTAAAAAACACAATCTGATGGACGCCACTGGACGACTGCAGGAGATGATCTGCTCTCAACATGACAAACTACTGGAGATTTTCTGTCGTACTGATCAGTGCTGTATTTGTTATCTGTGTACAATGGATAAACACAAAAGCCACGACACTGTATCAGCTGCAGCAGAAAGGACTGACAAACAGAGGCAGTTGGAGGAAACCCAGAGTAAACTCCATCAGAGAATCCAGAGGAAACTGAAGGAGTGTGAGGAGCTGAGAGCAGCTGTAGAGTCTCACAAGCGCTCTGCACAGGCAGTAGTGGAGGACACTGAGAGGATCTTTACTGAGCTCATCTGCTCCATTGAGAAGAGCCGCTCTGAGGTGATGCAGTTGATCAGAGATCAGGAAAAGGCTGCAGTGAGTGGGGCTGAAGGACGACTGGAGCGACTGAAGCAGGAGATTGATGATCTGAGGAGGAGAGACGCTGAGCTGGAGCAGCTTTCACACACAGACCATCACATCCATTTCCTACAGAGTTTCCAGTCTCTCTCTACTCCTCCTGGATCCACAGACTCATCCAGCATCACTGTCAGCTCTCCTCTCTCTTTTGATGATGTTGGTAAATCTGTGTCTCGTCTGAGAGAGAAACTGGAGCATTTCTGCAGAGAGGAGATAAAAAAGATATCTGGTAAAGTGAGAGAGATAACCAGGATATCCAAACCTGAACCAAAGACCCGTGAGGACTTCCTCCAGTATTACGGTCCGCTTACTTtggatccaaacacagtgaataatTACCTGTTGCTGTCTGAAGGGAACAGAGTGTTTGAATACACTTCTAAAGACAATcagtatcctgatcatccagacaggtTTGATTGTTGGCTTCAGGTGTTGtgtagagagagtgtgtgtggacgctgttactgggaggtgGAGTGGAGCGGCAGAGGAGTGTCCATATCAGTGGCGTATAAGAGCATCAACAGGAAAGGAGAGGGAACTGAGTGTGTAATTGGACGTAAtgatcagtcctggagtttgtccTGCTCTGACTCCAGTTGTTCATTTTGGCACAATAACAAACACACCAAACTGCCAGTAATGTCCATCTCATCTAGAATAGGAGTgtatgtggatcacagtgcaggaactctttCCTTCTACAGCATCTCTGACACAATGAACCTCATTCACAGCATTCACACCACATTCACTCAGCCACTCTACCCTGGGTTTAGGATCAATTCtttatattttctattatcaaaaagcaagccaaaaataaaactaaGTGATGTGAAGATGTAGATGGTGATAAATCAGTAACTgtgaaacatttttgttttattatcaataaatcaaGACTAAATTCTCCACCAAATTAAGAAACAGAAATGCCAGCAAAGATATGAAATGTCAAATGATGAACGTTGTGCTTTTGTCACTTTGAACAGAATCATATCCTGCTGACTCTCACTGCATGTTTCTAGATTTCACACAGGCATGTTCTTGTTTATATGTGCtctgataaaaaaattaaactttaatcTTAAAAGAATAGCAGAAATATATAATTATTCTCTCAGTGCTTTTATATCACAGCCATTGTGATCTTgcatttatattattgtattaatttttgATCTATTGGAACAGATTTATTTGTACTGAAAATTTGCTATTATTGCATCAGTTTTGAAAGACAcatatattgtcatttattaaggCAAAAAAAATAGATCATTAGTTTATATTATTGACCAATATAAAATGCCAGAAGAATCCTTAGTAGTACTGCAAGATAAATGTATTTCTGTAGAATTTGTATTTTACTTTATCAGCCTCAGTAAGAATATAGTCCTctgtattttgtgtattttcacATTGTGAGTTTGTTTCTCTCCTGATGAATTCTGTTTTACCACAGACAAAAGTGTAACCCCGAGTTCAGCTTCTAAATAAACATCACTGTCAAAACACGA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060512-201 Predicted to enable zinc ion binding activity. Predicted to be involved in protein ubiquitination. Orthologous to human RNF135 (ring finger protein 135).

Ensembl:

ensembl_id ENSDART00000098284

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033923 lncRNA downstream 144177 42982889 ~ 42986970 (-) True XLOC_016755
TCONS_00033400 lncRNA downstream 148137 42981204 ~ 42983010 (-) False XLOC_016755
TCONS_00033399 lncRNA downstream 148137 42981204 ~ 42983010 (-) False XLOC_016755
TCONS_00033398 lncRNA downstream 152535 42962862 ~ 42978612 (-) True XLOC_016754
TCONS_00033397 lncRNA downstream 194909 42935881 ~ 42936238 (-) True XLOC_016751
TCONS_00033924 lncRNA upstream 242402 43378102 ~ 43379093 (-) True XLOC_016763
TCONS_00032871 lncRNA upstream 373802 43509502 ~ 43517018 (-) True XLOC_016764
TCONS_00033925 lncRNA upstream 431445 43567145 ~ 43571656 (-) False XLOC_016766
TCONS_00033926 lncRNA upstream 432374 43568074 ~ 43571670 (-) False XLOC_016766
TCONS_00033927 lncRNA upstream 433986 43569686 ~ 43571760 (-) True XLOC_016766
TCONS_00032864 mRNA downstream 217 43129320 ~ 43130930 (-) True XLOC_016759
TCONS_00032863 mRNA downstream 335 43128362 ~ 43130812 (-) False XLOC_016759
TCONS_00032862 mRNA downstream 6400 43098604 ~ 43124747 (-) True XLOC_016758
TCONS_00032861 mRNA downstream 7198 43098237 ~ 43123949 (-) False XLOC_016758
TCONS_00032860 mRNA downstream 7198 43098237 ~ 43123949 (-) False XLOC_016758
TCONS_00032866 mRNA upstream 9238 43144938 ~ 43151358 (-) False XLOC_016761
TCONS_00032867 mRNA upstream 14169 43149869 ~ 43151358 (-) True XLOC_016761
TCONS_00032868 mRNA upstream 23471 43159171 ~ 43168292 (-) False XLOC_016762
TCONS_00032869 mRNA upstream 24051 43159751 ~ 43191465 (-) False XLOC_016762
TCONS_00032870 mRNA upstream 24117 43159817 ~ 43196595 (-) True XLOC_016762
TCONS_00032856 other downstream 168803 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032848 other downstream 426214 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032837 other downstream 715359 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032833 other downstream 756038 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032811 other downstream 1184251 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032894 other upstream 1057099 44192799 ~ 44199697 (-) False XLOC_016779
TCONS_00032911 other upstream 1387156 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032916 other upstream 1622349 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032917 other upstream 1627382 44763082 ~ 44763375 (-) True XLOC_016791
TCONS_00032918 other upstream 1638575 44774275 ~ 44774595 (-) True XLOC_016792

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU408589 True 1875 lncRNA 0.42 4 CI01000152 550220 ~ 557817 (+)