RNA id: TU617794


Basic Information

Item Value
RNA id TU617794
length 1838
lncRNA type read_through
GC content 0.43
exon number 2
gene id G545600
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75419049 ~ 75490051 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCCGATTTTTAATACATTAAATAACTTTAGACTTTTTCATGTTTAGATAAATAAATCTAGTTTCCTTTTTTATGAACCATCTAGGTAATCAAACACTTATACAAAAGCGATACAAAAGTGATGTGACAGAGGTGTCATATGTGCTTATTGAAAACTACtgataggagagagaggtctTCACTTTCAGAGTGATTTATGAGGATGAAAGAAAAACTAGCCTCTATGCACAGGTCTGGGGAAACTAGCTGTGTGCTATGCAATAGAAATGGAACTGAAGTAGTATTTTTTAAAAGAGGTGTATTAAGACAACATTAAAGGGGATCAACTCTTGTCAAGTCTAAACATTTTCTGCTTTAATGAAAAATGATTTGAGATTGATGAGTGGGTCTTATTGTACTATTCAAACTACAGTTCAGAAAATGCCATTGCCTCATTCTTCAAGTGTATTACACATTCCTTGACTAGGAGTCACATCATACTATGCTGAGATTCAGTTTATCTACCATCAAAGGGAATTTCCCAGCAAAAACATGTACTCCAGGGATACTAGCCTTTTCACTTCTGTAAATGTACAACTGGGAGCAGAGCAAAAATTAAACAACAGTTTGCCAAACATACACTAATAATTACATTCCAAAGAATCTCATCGAGGGATACATCAGAAAGCACATGATGCCTGTGTCGGCCACGCCTCTCCGTAATCTCTACGTCAGCCTCCTTGTCTGTTAGATTCAGTAGTATGAGAGGACAGTTCCTCTGACTAGGCTACTGTGAGCAGGTACTGGGTAGGCCTGAGTCAGAGCCTTAACCCATCCTTTCTgttggagagagattgagagagcatGGGTCGTTTTGTGGAGCTGGATGGCCGTTGTCCTGCTCACTCAACAAGGTACATGCACCATGGCACTGCcactggtgcacacacacacacacacacacacacacacacactgagtataccaaacattaagaacaccttcctaatattgagttacaccacgtttgcactcagaacagcctcaattcatcggacatggactctacaaggtgtcgaaggtgttccatagggatgctggcccatgttgactccaatagtTCCCAcggttgtgtgaagttggctggatgtcctttggctggtggaccattcttgatacacacgggaaaaacccagcaccgttacagtctttgacacaaaccggtgcgcctgacacctacaccataacccgttcaaaggcacttcaatatttagtcttgcccattcaccctctgaatgacacacatacacaatacatgtctcaattgtctcaaggcttaaaaatcaggTTGAACCTGTCTTcaactacactgattgaagtggatttaacaagtgacatcacctggattcatctggtcagtctatgccatggaaagagcagttctTAATGTTTAGTACACTCAGTGTCTATAGACcaacagactaacacacacacacacacacagatgcacacaacGGCACAACCAGCGAGGGAAAACACGGGGGATGGATTCCCCAGAGACATGGGTTGGACCAGCAACTCCCACAACCAACCAGACAATCAGATCAACCAGTAGGTATGACACTGTTACGTGTGCATGAGGAGGATATGTGGGGACTCTCGATGGTCAGACACTCACTTACTCAGTGCTGCCATATGGGTCAAATAACCAGTGTGTGGAACTGTACATGTTAACAGGTCTGTGGATCGCATGACCAAGCAGAGTGACAACACAGAGGCCTCTAGGACATGTGTCCTTGAGGAGAAATTAAACAACGGACCAATACCCTTCAGAGGACCGTTAAGACTGTGACAACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU617672 lncRNA upstream 82031 75335010 ~ 75337018 (+) True G545492
TU617686 lncRNA upstream 161821 75257002 ~ 75257228 (+) True G545506
TU617684 lncRNA upstream 163469 75255374 ~ 75255580 (+) True G545504
TU617674 lncRNA upstream 172806 75245816 ~ 75246243 (+) True G545494
TU617658 lncRNA upstream 186847 75231856 ~ 75232202 (+) True G545481
TU617884 lncRNA downstream 107114 75597165 ~ 75597427 (+) True G545684
TU617926 lncRNA downstream 168244 75658295 ~ 75658516 (+) True G545725
TU617944 lncRNA downstream 196696 75686747 ~ 75689195 (+) True G545742
TU617917 lncRNA downstream 213439 75703490 ~ 75728642 (+) True G545716
TU617960 lncRNA downstream 243595 75733646 ~ 75734326 (+) True G545757
XM_021607687.2 mRNA upstream 10374 75393797 ~ 75408675 (+) False LOC110526588
XR_005052239.1 mRNA upstream 10374 75393797 ~ 75408675 (+) True LOC110526588
XM_021607679.2 mRNA upstream 94413 75316505 ~ 75324636 (+) False LOC110526584
XM_021607680.2 mRNA upstream 94413 75316505 ~ 75324636 (+) True LOC110526584
XM_021607677.2 mRNA upstream 224359 75168834 ~ 75194690 (+) False LOC110526583
XM_021607693.2 mRNA downstream 8645 75498696 ~ 75572903 (+) False LOC110526596
XM_021607694.2 mRNA downstream 8645 75498696 ~ 75572903 (+) False LOC110526596
XM_021607696.2 mRNA downstream 8645 75498696 ~ 75572903 (+) False LOC110526596
XM_021607697.2 mRNA downstream 54859 75544910 ~ 75572903 (+) True LOC110526596
XM_036980977.1 mRNA downstream 174318 75664369 ~ 75702602 (+) True LOC110526967
TU617662 other upstream 180885 75237800 ~ 75238164 (+) True G545485
TU616612 other upstream 1130911 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 2031362 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 2273702 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 2652198 72765681 ~ 72766851 (+) True G542890
TU618729 other downstream 438177 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 1397381 76887432 ~ 77036313 (+) False LOC110526968
TU620306 other downstream 1787941 77277992 ~ 77279354 (+) True G547884
TU620456 other downstream 2022558 77512609 ~ 77523423 (+) True G548000
TU620974 other downstream 2324324 77814375 ~ 77817061 (+) True LOC110526614

Expression Profile