RNA id: TCONS_00032868


Basic Information

Item Value
RNA id TCONS_00032868
length 1089
RNA type mRNA
GC content 0.46
exon number 3
gene id XLOC_016762
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 43159171 ~ 43196595 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gagatagGGAAGGAGAGAGAGGGTTAAAGGGAAACAGTAAGTGTCACAACTCTAACAGAGAGTCAGTAGGAGCGCGTGAGAGAGAAACTCAGCCAGCGAAGAGCTGAAGGGAAGACAGAGCTTTAATAGGAAATCAAGAGGAAACACTATCCCAACTGGATTACTACAGTATAGAGATGGCAGTGACCGGGGAAGAAACCGAGTCAGcTGCCACAGGAGACATGCCAGCATATCAGATCCGCTCGCCGTCGTCAGGGCTGCCTCCAGGTGTTGTCATGGCATCGTCACCAGGGGCGATGCACAGCCCGCAACCCAACGCAGAGGAGGCCACGCGCAAGAGAGAAGTCCGTCTGATGAAGAACAGGGAGGCAGCGCGCGAGTGTcgcagaaaaaagaaagaatacgTGAAGTGTTTGGAGAATCGGGTTGCCGTGCTGGAAAACCAGAACAAGACTCTCATAGAGGAGCTGAAAGCCCTTAAAGACATCTACTGCCACAAGCCTGAATAACCCTCACAAACACTGCTCAAGGACTGTGTGATTCACACAATACCCGTCTCCTCACTTCTACTGCTGCACCGCCTGGATTTTATCgcttcgttcgttcgtttgtttggCCAAATGTTTTTATAAGAAGATGCAAACGTTGCTTTGAGGATGCAGAGGTCTACTGCTACCTGCAATGTAtcctcacacacacagaaatatgcATTTTAGGTTCATGTGTTCACAAAAGCGTTTCTCGCCAGCTAAAAATGCTCAGATTTGAGTGCTTGAATATGattataatatgaatattaatttttacaatttttgacCGATACTGCAGCCAGCCACCAGAGGGTGCttaaaatgatttgatttaaCACTTaaatttaacccaggctcattctgattacgtacccctatacacatttctggagagcacaaaatacatcccaggagctacgtttttttatagtttttgctttcgcaaattcaccagagggcgctgtgtacactttttcagatctcaaatttgccTTTCGCACCTGCTGTCctcaagtaaatccaccagaggtcgctgtcaacTGATTGACCAAccgactga

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7031 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of ATF4-CREB1 transcription factor complex. Is expressed in brain. Orthologous to human CREM (cAMP responsive element modulator).

Ensembl:

ensembl_id ENSDART00000132588

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033923 lncRNA downstream 172201 42982889 ~ 42986970 (-) True XLOC_016755
TCONS_00033400 lncRNA downstream 176161 42981204 ~ 42983010 (-) False XLOC_016755
TCONS_00033399 lncRNA downstream 176161 42981204 ~ 42983010 (-) False XLOC_016755
TCONS_00033398 lncRNA downstream 180559 42962862 ~ 42978612 (-) True XLOC_016754
TCONS_00033397 lncRNA downstream 222933 42935881 ~ 42936238 (-) True XLOC_016751
TCONS_00033924 lncRNA upstream 209810 43378102 ~ 43379093 (-) True XLOC_016763
TCONS_00032871 lncRNA upstream 341210 43509502 ~ 43517018 (-) True XLOC_016764
TCONS_00033925 lncRNA upstream 398853 43567145 ~ 43571656 (-) False XLOC_016766
TCONS_00033926 lncRNA upstream 399782 43568074 ~ 43571670 (-) False XLOC_016766
TCONS_00033927 lncRNA upstream 401394 43569686 ~ 43571760 (-) True XLOC_016766
TCONS_00032866 mRNA downstream 7813 43144938 ~ 43151358 (-) False XLOC_016761
TCONS_00032867 mRNA downstream 7813 43149869 ~ 43151358 (-) True XLOC_016761
TCONS_00032865 mRNA downstream 23471 43131147 ~ 43135700 (-) True XLOC_016760
TCONS_00032864 mRNA downstream 28241 43129320 ~ 43130930 (-) True XLOC_016759
TCONS_00032863 mRNA downstream 28359 43128362 ~ 43130812 (-) False XLOC_016759
TCONS_00032872 mRNA upstream 369554 43537846 ~ 43545342 (-) True XLOC_016765
TCONS_00032873 mRNA upstream 409002 43577294 ~ 43583896 (-) True XLOC_016767
TCONS_00032874 mRNA upstream 417279 43585571 ~ 43605556 (-) True XLOC_016768
TCONS_00032875 mRNA upstream 451263 43619555 ~ 43635777 (-) True XLOC_016769
TCONS_00032876 mRNA upstream 470691 43638983 ~ 43653328 (-) False XLOC_016771
TCONS_00032856 other downstream 196827 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032848 other downstream 454238 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032837 other downstream 743383 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032833 other downstream 784062 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032811 other downstream 1212275 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032894 other upstream 1024507 44192799 ~ 44199697 (-) False XLOC_016779
TCONS_00032911 other upstream 1354564 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032916 other upstream 1589757 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032917 other upstream 1594790 44763082 ~ 44763375 (-) True XLOC_016791
TCONS_00032918 other upstream 1605983 44774275 ~ 44774595 (-) True XLOC_016792

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU409220 False 786 TUCP 0.37 2 CI01000152 509697 ~ 565284 (-)
mexican tetra (Astyanax mexicanus) TU409220 True 2019 lncRNA 0.39 4 NW_019172828.1 4472100 ~ 4477769 (+)