RNA id: TU618725



Basic Information


Item Value
RNA id TU618725
length 267
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G546461
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75923907 ~ 75924173 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCTAAACACTGGGATTGGCGACAGGCAAGGAGCTAAACACGGGGATTGTCGACAGGCAAGGAGCTAAACACTGGGATTGGCGACAGGCAAGGAGCTAAACACTGGGATTGGCGACAGGCAAGGAGCTAAACACTGGGATTGTCGACAGGCAAGGAGCTAAACACTGGGATTGGCGACAGGCAAGGAGCTAAACACTGGGATTGGCGACAGGCAAGGAGCTAAACACTGGGTTAGCGACAGGCAAGGAGCTAAACACTGGGATTGTCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU618710 lncRNA upstream 12058 75911540 ~ 75911849 (+) True G546446
TU618708 lncRNA upstream 14292 75906553 ~ 75909615 (+) True G546444
TU618704 lncRNA upstream 22154 75901518 ~ 75901753 (+) True G546440
TU618668 lncRNA upstream 45170 75878227 ~ 75878737 (+) True G546404
TU618627 lncRNA upstream 63098 75853637 ~ 75860809 (+) True G546373
TU618737 lncRNA downstream 20361 75944534 ~ 75959568 (+) True G546472
TU618744 lncRNA downstream 40705 75964878 ~ 75967129 (+) True G546475
TU618757 lncRNA downstream 71237 75995410 ~ 75995643 (+) True G546486
TU618760 lncRNA downstream 77819 76001992 ~ 76008034 (+) True G546488
TU618843 lncRNA downstream 141732 76065905 ~ 76066122 (+) True G546570
XM_021607700.2 mRNA upstream 108676 75779416 ~ 75815231 (+) False cylda
XM_021607702.2 mRNA upstream 108676 75779420 ~ 75815231 (+) False cylda
XM_021607701.2 mRNA upstream 108676 75779421 ~ 75815231 (+) True cylda
XM_036979156.1 mRNA upstream 158616 75752941 ~ 75765291 (+) False nod2
XR_005052241.1 mRNA downstream 680517 76604690 ~ 76620121 (+) False LOC118964933
XR_005052242.1 mRNA downstream 680517 76604690 ~ 76620121 (+) False LOC118964933
XR_005052240.1 mRNA downstream 680519 76604692 ~ 76620121 (+) False LOC118964933
XM_036980994.1 mRNA downstream 902828 76827001 ~ 76950160 (+) False LOC110526968
XM_036980992.1 mRNA downstream 902828 76827001 ~ 77038395 (+) False LOC110526968
TU617795 other upstream 501155 75421861 ~ 75422752 (+) True G545601
TU617662 other upstream 685743 75237800 ~ 75238164 (+) True G545485
TU616612 other upstream 1635769 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 2536220 73372805 ~ 73387687 (+) False LOC100136290
TU614905 other upstream 2778560 73038621 ~ 73145347 (+) True LOC110526543
TU618729 other downstream 4055 75928228 ~ 75970674 (+) True G546464
TU619876 other downstream 963259 76887432 ~ 77036313 (+) False LOC110526968
TU620306 other downstream 1353819 77277992 ~ 77279354 (+) True G547884
TU620456 other downstream 1588436 77512609 ~ 77523423 (+) True G548000
TU620974 other downstream 1890202 77814375 ~ 77817061 (+) True LOC110526614

Expression Profile