RNA id: TU618757


Basic Information

Item Value
RNA id TU618757
length 234
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G546486
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75995410 ~ 75995643 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTAATCCACAGACGCCATGCATTCTTTAAGtgacaaagaggagagaggaaaaacgAGCAGAGAGTGCTTTAGCATAGAACAGCTCTTATATCAAACAGGGGACATTGAACTGAGAGGCCTCATCAGTCGATTCCCTTTTTTGTGGTTTATTAGTCTTCCCTACGTAATTTACAGAACCAAGATGAACATAAGACACATTGTGTGGCATGGGATCTATCAAAATCATGTATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU618744 lncRNA upstream 28281 75964878 ~ 75967129 (+) True G546475
TU618737 lncRNA upstream 35842 75944534 ~ 75959568 (+) True G546472
TU618725 lncRNA upstream 71237 75923907 ~ 75924173 (+) True G546461
TU618710 lncRNA upstream 83561 75911540 ~ 75911849 (+) True G546446
TU618708 lncRNA upstream 85795 75906553 ~ 75909615 (+) True G546444
TU618760 lncRNA downstream 6349 76001992 ~ 76008034 (+) True G546488
TU618843 lncRNA downstream 70262 76065905 ~ 76066122 (+) True G546570
TU618855 lncRNA downstream 79155 76074798 ~ 76075231 (+) True G546582
TU618883 lncRNA downstream 114385 76110028 ~ 76110239 (+) True G546608
TU618893 lncRNA downstream 123796 76119439 ~ 76119696 (+) True G546617
XM_021607700.2 mRNA upstream 180179 75779416 ~ 75815231 (+) False cylda
XM_021607702.2 mRNA upstream 180179 75779420 ~ 75815231 (+) False cylda
XM_021607701.2 mRNA upstream 180179 75779421 ~ 75815231 (+) True cylda
XM_036979156.1 mRNA upstream 230119 75752941 ~ 75765291 (+) False nod2
XR_005052241.1 mRNA downstream 609047 76604690 ~ 76620121 (+) False LOC118964933
XR_005052242.1 mRNA downstream 609047 76604690 ~ 76620121 (+) False LOC118964933
XR_005052240.1 mRNA downstream 609049 76604692 ~ 76620121 (+) False LOC118964933
XM_036980994.1 mRNA downstream 831358 76827001 ~ 76950160 (+) False LOC110526968
XM_036980992.1 mRNA downstream 831358 76827001 ~ 77038395 (+) False LOC110526968
TU618729 other upstream 24736 75928228 ~ 75970674 (+) True G546464
TU617795 other upstream 572658 75421861 ~ 75422752 (+) True G545601
TU617662 other upstream 757246 75237800 ~ 75238164 (+) True G545485
TU616612 other upstream 1707272 74287778 ~ 74288138 (+) True G544565
TU615384 other upstream 2607723 73372805 ~ 73387687 (+) False LOC100136290
TU619876 other downstream 891789 76887432 ~ 77036313 (+) False LOC110526968
TU620306 other downstream 1282349 77277992 ~ 77279354 (+) True G547884
TU620456 other downstream 1516966 77512609 ~ 77523423 (+) True G548000
TU620974 other downstream 1818732 77814375 ~ 77817061 (+) True LOC110526614
TU620991 other downstream 1866425 77862068 ~ 77865868 (+) False LOC110526615

Expression Profile