RNA id: TCONS_00033927


Basic Information

Item Value
RNA id TCONS_00033927
length 2075
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id XLOC_016766
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 43567145 ~ 43571760 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGTGATTCAAATCATTCGAATCAATTTGACGACTCATTTGAACCAAAACTTTTTGTTCGAATCGTTCGTCCTGTGAATTGGGTGTAACGTTATTTCCTGTGGGAGGAGGAAGGGTGAGGCTGTGCTGCAAACCCATCTCGCAGTTCACCgaccacacacacattttacactCACACCCGGACTGGGGACACGCCGAGAAGGGCGAGCTGGACTCTCTGCCCTAGTTCAGCCATTTATTACCAGCATTATCCACTATTTGACTCTTTTATGCAAGAGAATCGAGCGTTTTTGTACTTTTCAACCAGCTGTTGATTCAAAGTGGACCACGGAAACAAAGCAGACACGGCAACCGGACTGCTGGACCAAACGCGACTTTCCCTGGCAAATGTGGTTTTATTTGTGATTTTCTTGGATGAATCACGCGTGTTAAGGTAAGGAGGATCAATTACCTATAGACTTTCGTGTCATATCTGTTTGCTGAATTGACTATTTTTAGGTAAACCAGTGATCATTAAAGGGTTTGATCTGGAAAAGTGGTTTAAGGTTAGGAACTTTGGGTGGGGATGTCCTGATCACTTCAAAGAACAGGCGCAGATCTGCTCATAACGTGATTCACAGACAGTGTCCCTCCAGGCTATGTGTTTCCCAGACCGCCTGTTATCTCGGATCTCTCTGTCGCGTCTTCTGTGTCCCCGACATCTGTTGTAATTCGTCTGTTCCAGGCCTCAGAGGGTCCGAGGGGGGCTGTGGTGTTTAACTGGCCCTTGAACAATGCTTTATTTGGAAGTTGCTTGAGTAAATATGCCTCTCTGGGAGGTGAAATGATGTAGCCGCGTTTTGTGTGACTCATGGTCCTGTTTGGGACGGGAAGCATTAGAGCACACTATGATGCGGTGGATGTGATGATGGTATTATTTTGTACAACAACGCTTTATATAGGAGAAGTTTGGGAATAGCACTGGACCAGGACTAAGTATAACTGCATTTTATCTGTGGTAAAGCGCCATGTGATGTGTTGGGAGTATCACAGACAACACCACACCAGTGTGAAATGCTCTAGAGCCAAGTTTACAAGCAAAGATCCCGCAGTGATCTGCATTAAAAACTCACATCCTACATATTCAGGTCACGTGACTGCGTGGAAGAATGTTGTTGTAGTTTTTCTGCCGGATGTGTATTCAGTTATTTGTTTGCCCTtaagtttaaagtaaattaaTAGTCTTTTTGTAAAGTTATGCACATGGTTACAGTCCTATTAGTGTTATAATAAAAGAAGATTTGATGTAGGCTACTGGTGTTTTTATTGGAATAACAGCAGGCCATTACAATGTAAATACAACAGATAAAAGTATAGTACAAACAATACAGAGATTACTTTATTGCCGTAAGCGATACATGACAGTTTAAAAGAAGTGTTTGAgcaatgtttatttctatagtgcttttacaacgtagattgtgtTAAAAGCAGCTTAtcataaaagttctagtaaactgaagctGTGTCAGTCCGGCTTTCAGTGTTTGAGTTCGGTTTGGTGTGGTTTAATTTCACTGCTTAAAGTCTAACAATAGTATAGCAAAAAGGAAGAAAGTAATTATTGTATTGGTGTTATTGGTGAAGTTTGGCCCCCCTCGACGGGGCATCACGTAACAAGCTGGATGTTACCTTTGGTTGGAAACTTTTTGCTTGTTAATTAATAACTGGCTATATTAGAAACGGCGTTGGTGTGTGAAAGCTTTCATGGTGCAGTAGATtagcaaacactaaaacaaaaaatgacaTACTCATggataggcatgggctggtataagtttgtgatggtatgataaccttgaataaaaatatcacggtttcacagtattgtgattactgctctaaaataatgttttaattgtCTTAATTCAAACAACACACTTTTTCCACATTAAACCCAATATACAGTATTTCACTtaagaattttttatattttgtagttTGCAGTAAACCCACTTCTGCTGGGTCAATTATTTTACAATCACAGGTTTCTTTataacacataaaacaaaacctctacatataccttaggaaag

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0010467 gene expression biological_process
GO:0048024 regulation of mRNA splicing, via spliceosome biological_process
GO:1903311 regulation of mRNA metabolic process biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0036002 pre-mRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032871 lncRNA downstream 52668 43509502 ~ 43517018 (-) True XLOC_016764
TCONS_00033924 lncRNA downstream 190593 43378102 ~ 43379093 (-) True XLOC_016763
TCONS_00033923 lncRNA downstream 582716 42982889 ~ 42986970 (-) True XLOC_016755
TCONS_00033400 lncRNA downstream 586676 42981204 ~ 42983010 (-) False XLOC_016755
TCONS_00033401 lncRNA upstream 57993 43629753 ~ 43630083 (-) True XLOC_016770
TCONS_00033928 lncRNA upstream 135707 43707467 ~ 43707953 (-) False XLOC_016773
TCONS_00032886 lncRNA upstream 253855 43825615 ~ 43835502 (-) False XLOC_016775
TCONS_00032904 lncRNA upstream 704774 44276534 ~ 44282837 (-) True XLOC_016781
TCONS_00032909 lncRNA upstream 829320 44401080 ~ 44406125 (-) False XLOC_016785
TCONS_00032872 mRNA downstream 24344 43537846 ~ 43545342 (-) True XLOC_016765
TCONS_00032870 mRNA downstream 373091 43159817 ~ 43196595 (-) True XLOC_016762
TCONS_00032869 mRNA downstream 378221 43159751 ~ 43191465 (-) False XLOC_016762
TCONS_00032868 mRNA downstream 401394 43159171 ~ 43168292 (-) False XLOC_016762
TCONS_00032867 mRNA downstream 418328 43149869 ~ 43151358 (-) True XLOC_016761
TCONS_00032873 mRNA upstream 5534 43577294 ~ 43583896 (-) True XLOC_016767
TCONS_00032874 mRNA upstream 13811 43585571 ~ 43605556 (-) True XLOC_016768
TCONS_00032875 mRNA upstream 47795 43619555 ~ 43635777 (-) True XLOC_016769
TCONS_00032876 mRNA upstream 67223 43638983 ~ 43653328 (-) False XLOC_016771
TCONS_00032877 mRNA upstream 67337 43639097 ~ 43653015 (-) True XLOC_016771
TCONS_00032856 other downstream 607342 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032848 other downstream 864753 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032837 other downstream 1153898 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032833 other downstream 1194577 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032811 other downstream 1622790 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032894 other upstream 621039 44192799 ~ 44199697 (-) False XLOC_016779
TCONS_00032911 other upstream 951096 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032916 other upstream 1186289 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032917 other upstream 1191322 44763082 ~ 44763375 (-) True XLOC_016791
TCONS_00032918 other upstream 1202515 44774275 ~ 44774595 (-) True XLOC_016792

Expression Profile

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