RNA id: TCONS_00033401


Basic Information

Item Value
RNA id TCONS_00033401
length 331
lncRNA type intronic
GC content 0.33
exon number 1
gene id XLOC_016770
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 43629753 ~ 43630083 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACGCCAGGATGAAGTTGAAAGTAGATGGCCTTATCCACCATATTTTCCATCTAAGAATTGGAATGGCAATTTGTGGCAGGGGCATACTCGCGTCAAGCTCCCTAAACTGTTCTGAAATGCAGTTATGCAGAGCAGTATTATACCTATATAATATTAAACAACTAAATATCATTCcttctgttattttctttttctgaactgACATTTTGAAAATCTTGCAAAATGACACAATGAACTGTATTGGTCTGAATGGTCAATTGTCGTTGATTATAAGTCAGAAATTACCATAAAAAGAGAATTTAAAGTTAATTGTTTAAttgcaacttaatt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033927 lncRNA downstream 57993 43569686 ~ 43571760 (-) True XLOC_016766
TCONS_00033926 lncRNA downstream 58083 43568074 ~ 43571670 (-) False XLOC_016766
TCONS_00033925 lncRNA downstream 58097 43567145 ~ 43571656 (-) False XLOC_016766
TCONS_00032871 lncRNA downstream 112735 43509502 ~ 43517018 (-) True XLOC_016764
TCONS_00033924 lncRNA downstream 250660 43378102 ~ 43379093 (-) True XLOC_016763
TCONS_00033928 lncRNA upstream 77384 43707467 ~ 43707953 (-) False XLOC_016773
TCONS_00032886 lncRNA upstream 195532 43825615 ~ 43835502 (-) False XLOC_016775
TCONS_00032904 lncRNA upstream 646451 44276534 ~ 44282837 (-) True XLOC_016781
TCONS_00032909 lncRNA upstream 770997 44401080 ~ 44406125 (-) False XLOC_016785
TCONS_00032910 lncRNA upstream 773672 44403755 ~ 44406122 (-) True XLOC_016785
TCONS_00032874 mRNA downstream 24197 43585571 ~ 43605556 (-) True XLOC_016768
TCONS_00032873 mRNA downstream 45857 43577294 ~ 43583896 (-) True XLOC_016767
TCONS_00032872 mRNA downstream 84411 43537846 ~ 43545342 (-) True XLOC_016765
TCONS_00032870 mRNA downstream 433158 43159817 ~ 43196595 (-) True XLOC_016762
TCONS_00032869 mRNA downstream 438288 43159751 ~ 43191465 (-) False XLOC_016762
TCONS_00032876 mRNA upstream 8900 43638983 ~ 43653328 (-) False XLOC_016771
TCONS_00032877 mRNA upstream 9014 43639097 ~ 43653015 (-) True XLOC_016771
TCONS_00032878 mRNA upstream 47956 43678039 ~ 43698531 (-) True XLOC_016772
TCONS_00032879 mRNA upstream 75510 43705593 ~ 43739740 (-) False XLOC_016773
TCONS_00032880 mRNA upstream 79644 43709727 ~ 43739559 (-) True XLOC_016773
TCONS_00032856 other downstream 667409 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032848 other downstream 924820 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032837 other downstream 1213965 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032833 other downstream 1254644 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032811 other downstream 1682857 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032894 other upstream 562716 44192799 ~ 44199697 (-) False XLOC_016779
TCONS_00032911 other upstream 892773 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032916 other upstream 1127966 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032917 other upstream 1132999 44763082 ~ 44763375 (-) True XLOC_016791
TCONS_00032918 other upstream 1144192 44774275 ~ 44774595 (-) True XLOC_016792

Expression Profile

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