RNA id: TCONS_00032879


Basic Information

Item Value
RNA id TCONS_00032879
length 3283
RNA type mRNA
GC content 0.48
exon number 26
gene id XLOC_016773
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 43705593 ~ 43739740 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACATTAGCTACagaaagtttaaaaaattaacaaaacaaagaaaggggtaaataaattagaattgtataaaagtgtatgaaaataaataaataaataaataagagcatTACAAGAAAGCTATATAACTCAAATCAACGGctgtgaactgtttttttttttttgctcttgatGACGGCGCGTGATGTGACGTCACCGGACCGGAGGCCGGGTGATCCTCCAACGCGTCTCTTTCTGTGCAGTCACACGGGCCGGGAATCGACAGCACAGGCCGGGATTTTGGAGTGAGGCGGTGTCCCCACCCCTCCGTCCGTGTCTGTATCCGTCTATGTGCGTGTGTTCTGGCCGGTGCTCTCGTGATTCGGTAACCGGGGGAAGATGGCGGACCCGGCGGAGTGCACCATTAAAGTCATGTGCCGTTTCAGGCCGTTGAACAGCTCGGAGGTGACAAGGGGAGACAAATACATCCCCAACTTTCAGGGACAGGATAGCGTCGTGATCGGGgGTAAGCCGTATGTGTTTGACAGAGTTTTCCAGTCCAACACGACACAGGAGCAGGTGTACACAGCCTGCGCTCAACAGATCGTCAAAGATGTACTTGCTGGATATAACGGAACCATTTTTGCCTATGGTCAGACGTCCTCAGGCAAAACACACACAATGGAGGGAAATCTCCATGATACAGATGGTATGGGAATTATTCCCAGAATAGTGCAAGACATCTTTAACTACATTTACTCTATGGATGAAAACCTGGAGTTTCACATTAAAGTGTCATATTTTGAAATTTATCTGGATAAGATTCGGGATTTGTTGGATGTTTCAAAGACTAATTTATCTGTACACGAAGATAAAAACAGGGTTCCTTATGTCAAGGGTTGCACTGAACGGTTTGTTTGCAGTCCAGAAGAAGTGATGGACACTATTGACGAGGGCAAATCCAACAGACATGTAGCTGTGACAAacaTGAATGAACACAGCTCCAGGAGTCACAGTATCTTCCTGATCAACGTCAAGCAGGAGAACACACAGACAGAACAGAAGCTCAGTGGGAAACTCTACCTGGTCGACTTGGCAGGCAGTGAGAAGGTCAGTAAAACAGGAGCTGAAGGCGCTGTGCTGGATGAAGCCAAAAACATCAACAAGTCTCTCTCATCTCTGGGCAACGTGATATCGGCCTTAGCCGAGGGCTCGACCTATGTCCCATACAGAGACAGTAAAATGACAAGAATCTTGCAGGATTCTCTTGGTGGAAACTGCAGGACCACCATCGTCATCTGCTGCTCTCCTTCCGCATTCAATGAAGCTGAGACTAAATCTACTCTTATGTTCGGCCAGAGAGCTAAGACTATCAAGAATACTGTGTGTGTCAATGTGGAGCTGACAGCAGAGCAGTGGAAGAAGAAAtacgagaaagagagagaacgaAACAAGAGCCTCCGAAACACCATCACATGGTTGGAGAACGAACTTAACCGGTGGAGAAATGGTGAAACGGTACCAGCAGAAGAGCAGTACGATAAGGAAAAGGTTAATGCAGAAGTGTTGGCACTGGATAACACCATTAATAATGATAAGTTTGCCTCCACACCAAGTATGCCGCCCATGCCAGGAATGCTTGGGACACGACTGACTGGTGTCGAGAAGGATAAATGTGAAGTTGAACTCGGCAAACTTTACAAACAACTCGATGACAagGATGAAGAGATTAATCAGCAGTCTCAGCTGGTGGAGAAGCTCAAGCAGCAGATGCTGGATCAGGAGGAGCTGCTGGCCTCTTCACGTCGAGATCACGATAACCTGCAGGCAGAGCTCACTCGTTTGCAGCTGGAGAACGAAGCGTCCAAAGAGGAGGTGAAGGAGGTGCTGCAGGCCCTGGAGGAGCTCGCTGTCAACTACGACCAGAAGAGTCAGGAGGTGGAGGACAAAACCAAGGAGTTTGAAGCGCTCAGTGAGGAGCTCAGTCAGAAATCTAGCACCCTGGCATCTATTGACTCAGAGCTGCAGAAACTGAAAGAAATGGCCAATCACCAGAAGAAGAGGGTGACCGAGATGATGTCCTCTCTGCTCAAAGATCTGACTGAGATTGGCATTGCTGTGGGCAACAATGACATCAAGCATGAAGGCAGTGGTCTTATAGACGAAGAGTTCACTGTAGCCAGACTCTACATCAGCAAGATGAAGTCCGAAGTCAAATCAATGGTCAAACGTTGCAAACAGCTGGAAAACACTCAATCTGAGAGTAACAAAAAGATGGATGAAAGTGATAAGGAGCTTGCAGCATGCCAGTTACGCATCTCCCAGCATGAAGCGAAAATCAAATCTCTGACTGAGTACCTGCAGAATGTAGAGCAGAAGAAGAGACAGCTGGAGGAGGATGTGGACTCTCTCAATGAAGAGCTGGTCAAAATCAGCGCTCAGGAGAAAGTACATGCGATGGAGAAAGAGAGTGAGATTCAGAGTGCCAATGAGGTGAAGgagGCAGTTGAGAAGCAGATCCAGAGTCACAGGGAGGCTCATCAGAAACAGATCAGCAGCCTGAGAGATGAGCTGGAAACCAAAGAGAAACTCATCACTGATCTGCAAGATCAGAATCAGAAGATCATGCTGGAACAGGAGCGTTTAAGGGTGGAACATGAGAAACTCAAATCCACCGACCAGGAGAAGAGCCGCAAACTGCATGAGCTCACGATGATGCAGGACCGCAGGGAACAGGCCAGACAAGATCTGAAAGGCTTGGAAGAGACTGTGGCTAAAGAGCTGCAGACTTTGCACAACCTCAGGAAATTGTTTGTTCAGGATCTGGCAACTCGTGTTAAAAAGagTGCAGAGATGGACTCTGATGAGACTGGTGGCAGTGCTGCTCAGAAGCAGAAGATCTCTTTCCTGGAGAACAATCTCGAACAGCTCACTAAGGTCCACAAACAGCTGGTGCGTGATAATGCCGACCTGCGCTGTGAGCTTCCTAAACTGGAGAAGCGTCTGCGGGCCACAGCCGAGCGAGTGAAGGCTCTGGAGACTGCGCTCAAAGAGGCCAAAGAGAACGCAGCCCGTGACCGCAAGCGCTACCAGCAGGAGGTGGACCGCATCAAAGAGGCCGTCAGAGCCAAAAACATGGCCCGCAGAGGACACTCCGCACAGATAGCTAAACCAATCAGGCCTGGACAGCAACCTGTAGCTTCTCCTACACACCCCAATGTGCTGCGTGGAGGTGGTGGTGTCCTCTACCAGAACAGCCAACCTATGCCTATCAGAGGAGGTGGCACTAAACAAGAGAAGAGCTGA

Function

GO:

id name namespace
GO:0060349 bone morphogenesis biological_process
GO:0030705 cytoskeleton-dependent intracellular transport biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0051216 cartilage development biological_process
GO:0007281 germ cell development biological_process
GO:0007018 microtubule-based movement biological_process
GO:0098971 anterograde dendritic transport of neurotransmitter receptor complex biological_process
GO:0007411 axon guidance biological_process
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070629-2 Predicted to enable ATP hydrolysis activity; microtubule binding activity; and plus-end-directed microtubule motor activity. Acts upstream of or within germ cell development; skeletal muscle tissue development; and skeletal system development. Predicted to be part of kinesin complex. Predicted to be active in microtubule. Is expressed in several structures, including central nervous system; digestive system; eye; pleuroperitoneal region; and trigeminal placode. Orthologous to human KIF5B (kinesin family member 5B).

Ensembl:

ensembl_id ENSDART00000113849

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033401 lncRNA downstream 75510 43629753 ~ 43630083 (-) True XLOC_016770
TCONS_00033927 lncRNA downstream 133833 43569686 ~ 43571760 (-) True XLOC_016766
TCONS_00033926 lncRNA downstream 133923 43568074 ~ 43571670 (-) False XLOC_016766
TCONS_00033925 lncRNA downstream 133937 43567145 ~ 43571656 (-) False XLOC_016766
TCONS_00032871 lncRNA downstream 188575 43509502 ~ 43517018 (-) True XLOC_016764
TCONS_00032886 lncRNA upstream 85875 43825615 ~ 43835502 (-) False XLOC_016775
TCONS_00032904 lncRNA upstream 536794 44276534 ~ 44282837 (-) True XLOC_016781
TCONS_00032909 lncRNA upstream 661340 44401080 ~ 44406125 (-) False XLOC_016785
TCONS_00032910 lncRNA upstream 664015 44403755 ~ 44406122 (-) True XLOC_016785
TCONS_00033929 lncRNA upstream 822274 44562014 ~ 44563193 (-) True XLOC_016787
TCONS_00032878 mRNA downstream 7062 43678039 ~ 43698531 (-) True XLOC_016772
TCONS_00032876 mRNA downstream 52265 43638983 ~ 43653328 (-) False XLOC_016771
TCONS_00032877 mRNA downstream 52578 43639097 ~ 43653015 (-) True XLOC_016771
TCONS_00032875 mRNA downstream 69816 43619555 ~ 43635777 (-) True XLOC_016769
TCONS_00032874 mRNA downstream 100037 43585571 ~ 43605556 (-) True XLOC_016768
TCONS_00032881 mRNA upstream 2834 43742574 ~ 43745146 (-) False XLOC_016774
TCONS_00032882 mRNA upstream 3505 43743245 ~ 43745175 (-) True XLOC_016774
TCONS_00032883 mRNA upstream 67490 43807230 ~ 43851915 (-) False XLOC_016775
TCONS_00032884 mRNA upstream 67529 43807269 ~ 43850897 (-) False XLOC_016775
TCONS_00032885 mRNA upstream 67529 43807269 ~ 43852207 (-) False XLOC_016775
TCONS_00032856 other downstream 743249 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032848 other downstream 1000660 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032837 other downstream 1289805 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032833 other downstream 1330484 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032811 other downstream 1758697 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032894 other upstream 453059 44192799 ~ 44199697 (-) False XLOC_016779
TCONS_00032911 other upstream 783116 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032916 other upstream 1018309 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032917 other upstream 1023342 44763082 ~ 44763375 (-) True XLOC_016791
TCONS_00032918 other upstream 1034535 44774275 ~ 44774595 (-) True XLOC_016792

Expression Profile

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