RNA id: TU621187


Basic Information

Item Value
RNA id TU621187
length 243
lncRNA type read_through
GC content 0.52
exon number 4
gene id G548629
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 78352008 ~ 78409500 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctcctctctccctccttcactctttTCCTCTTTcaatccctttctccctccccttcctgctGTCTATGTTTCTAACCCTTCTGTTCCTCCCTTCcttctcactcactccctctctccctctctttctctctccctctctttctctctccctctttctctctccctcgctttctctctccctcgctttctctctccctcgctttctctctccctctttctctctctctctctctctctctcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU621200 lncRNA upstream 103755 78247736 ~ 78248253 (+) True G548642
TU621126 lncRNA upstream 163841 78128193 ~ 78188167 (+) True G548573
TU621117 lncRNA upstream 224602 78120789 ~ 78127406 (+) False LOC110526621
TU621364 lncRNA downstream 131793 78541293 ~ 78541498 (+) True G548788
TU621828 lncRNA downstream 137804 78547304 ~ 78547608 (+) True G549207
TU621835 lncRNA downstream 143998 78553498 ~ 78553802 (+) True G549214
TU621845 lncRNA downstream 154627 78564127 ~ 78564333 (+) True G549224
TU621848 lncRNA downstream 157850 78567350 ~ 78567580 (+) True G549227
XM_021607749.2 mRNA upstream 127853 78220534 ~ 78224155 (+) True LOC110526623
XM_036981001.1 mRNA upstream 224582 78103895 ~ 78127426 (+) False LOC110526621
XR_005052243.1 mRNA upstream 224582 78103895 ~ 78127426 (+) False LOC110526621
XM_036981002.1 mRNA upstream 224582 78103896 ~ 78127426 (+) False LOC110526621
XM_021607739.2 mRNA upstream 261707 78088907 ~ 78090301 (+) True LOC110526620
XM_021607782.2 mRNA downstream 93450 78502950 ~ 78511984 (+) False LOC110526639
XM_021607779.2 mRNA downstream 93451 78502951 ~ 78511984 (+) False LOC110526639
XM_021607780.2 mRNA downstream 93451 78502951 ~ 78511984 (+) False LOC110526639
XM_021607781.2 mRNA downstream 93451 78502951 ~ 78511984 (+) False LOC110526639
XM_021607783.2 mRNA downstream 93451 78502951 ~ 78511984 (+) True LOC110526639
TU620991 other upstream 486140 77862068 ~ 77865868 (+) False LOC110526615
TU620974 other upstream 534947 77814375 ~ 77817061 (+) True LOC110526614
TU620456 other upstream 828585 77512609 ~ 77523423 (+) True G548000
TU620306 other upstream 1072654 77277992 ~ 77279354 (+) True G547884
TU619876 other upstream 1315695 76887432 ~ 77036313 (+) False LOC110526968
TU621269 other downstream 11360 78420860 ~ 78496470 (+) True G548703
TU621974 other downstream 359756 78769256 ~ 78769907 (+) True G549342
TU621977 other downstream 362612 78772112 ~ 78772557 (+) True G549345
TU622349 other downstream 741864 79151364 ~ 79163031 (+) False LOC110526645
TU622771 other downstream 1069981 79479481 ~ 79480078 (+) True G550054

Expression Profile