RNA id: TU621848


Basic Information

Item Value
RNA id TU621848
length 231
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G549227
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 78567350 ~ 78567580 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagaaagagagaaagagagaattagagagagcatacttaaattcacacaggacaccggataagacaagagaagtactccagatataacaaactgaccctagccccctgacacataaactactgcagcataaatactggaggctgagacaggaggggtcaggagacactgtggccccatccgatgatacccctggacagggccaaacaggaaggatataaccccacccactt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU621845 lncRNA upstream 3017 78564127 ~ 78564333 (+) True G549224
TU621835 lncRNA upstream 13548 78553498 ~ 78553802 (+) True G549214
TU621828 lncRNA upstream 19742 78547304 ~ 78547608 (+) True G549207
TU621364 lncRNA upstream 25852 78541293 ~ 78541498 (+) True G548788
TU621187 lncRNA upstream 157850 78352008 ~ 78409500 (+) True G548629
TU621850 lncRNA downstream 187 78567767 ~ 78568694 (+) True G549229
TU621868 lncRNA downstream 15579 78583159 ~ 78583444 (+) True G549247
TU621893 lncRNA downstream 73679 78641259 ~ 78641463 (+) True G549271
TU621894 lncRNA downstream 82598 78650178 ~ 78650401 (+) True G549272
TU621909 lncRNA downstream 107431 78675011 ~ 78676102 (+) True LOC110526640
XM_021607782.2 mRNA upstream 55366 78502950 ~ 78511984 (+) False LOC110526639
XM_036981011.1 mRNA downstream 89530 78657110 ~ 78676158 (+) False LOC110526640
XM_036981012.1 mRNA downstream 89530 78657110 ~ 78676158 (+) False LOC110526640
XM_036981014.1 mRNA downstream 196027 78763607 ~ 78909337 (+) False LOC110506124
XM_036981784.1 mRNA downstream 522012 79089592 ~ 79354959 (+) False LOC110526645
XM_021586631.2 mRNA downstream 957229 79524809 ~ 79531505 (+) False LOC110506775
TU621269 other upstream 70880 78420860 ~ 78496470 (+) True G548703
TU620991 other upstream 701482 77862068 ~ 77865868 (+) False LOC110526615
TU620974 other upstream 750289 77814375 ~ 77817061 (+) True LOC110526614
TU620456 other upstream 1043927 77512609 ~ 77523423 (+) True G548000
TU620306 other upstream 1287996 77277992 ~ 77279354 (+) True G547884
TU621974 other downstream 201676 78769256 ~ 78769907 (+) True G549342
TU621977 other downstream 204532 78772112 ~ 78772557 (+) True G549345
TU622349 other downstream 583784 79151364 ~ 79163031 (+) False LOC110526645
TU622771 other downstream 911901 79479481 ~ 79480078 (+) True G550054
TU622790 other downstream 1004299 79571879 ~ 79577990 (+) False LOC118936661

Expression Profile