RNA id: TU621977



Basic Information


Item Value
RNA id TU621977
length 446
RNA type TUCP
GC content 0.43
exon number 1
gene id G549345
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 78772112 ~ 78772557 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagacggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagaatcagaccactgcaaatctaccaagacctggccgtccctctaaacttttagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU621976 lncRNA upstream 396 78771229 ~ 78771716 (+) True G549344
TU621972 lncRNA upstream 5480 78766395 ~ 78766632 (+) True G549340
TU621932 lncRNA upstream 67899 78703290 ~ 78704213 (+) False G549307
TU621933 lncRNA upstream 67899 78703290 ~ 78704213 (+) False G549307
TU621936 lncRNA upstream 67899 78703290 ~ 78704213 (+) True G549307
TU621980 lncRNA downstream 2714 78775271 ~ 78775505 (+) True G549348
TU621984 lncRNA downstream 13557 78786114 ~ 78786335 (+) True G549352
TU621985 lncRNA downstream 13993 78786550 ~ 78786809 (+) True G549353
TU621986 lncRNA downstream 19405 78791962 ~ 78798188 (+) True G549354
TU621994 lncRNA downstream 40527 78813084 ~ 78813311 (+) True G549362
XM_036981011.1 mRNA upstream 95954 78657110 ~ 78676158 (+) False LOC110526640
XM_036981012.1 mRNA upstream 95954 78657110 ~ 78676158 (+) False LOC110526640
XM_021607780.2 mRNA upstream 260128 78502951 ~ 78511984 (+) False LOC110526639
XM_036981784.1 mRNA downstream 317035 79089592 ~ 79354959 (+) False LOC110526645
XM_021586631.2 mRNA downstream 752252 79524809 ~ 79531505 (+) False LOC110506775
XM_021586632.2 mRNA downstream 752252 79524809 ~ 79531505 (+) False LOC110506775
XM_036981020.1 mRNA downstream 770522 79543079 ~ 79570938 (+) True LOC110506774
XM_036981021.1 mRNA downstream 799281 79571838 ~ 79577990 (+) False LOC118936661
TU621974 other upstream 2205 78769256 ~ 78769907 (+) True G549342
TU621269 other upstream 275642 78420860 ~ 78496470 (+) True G548703
TU620991 other upstream 906244 77862068 ~ 77865868 (+) False LOC110526615
TU620974 other upstream 955051 77814375 ~ 77817061 (+) True LOC110526614
TU620456 other upstream 1248689 77512609 ~ 77523423 (+) True G548000
TU622349 other downstream 378807 79151364 ~ 79163031 (+) False LOC110526645
TU622771 other downstream 706924 79479481 ~ 79480078 (+) True G550054
TU622790 other downstream 799322 79571879 ~ 79577990 (+) False LOC118936661
TU622792 other downstream 799322 79571879 ~ 79577990 (+) False LOC118936661
TU622793 other downstream 799322 79571879 ~ 79577990 (+) True LOC118936661

Expression Profile