RNA id: TU621969


Basic Information

Item Value
RNA id TU621969
length 2824
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G549338
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 78909878 ~ 78912701 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAATTCGCCGGGGCATGAACtcaacaaggtgttgaaagcgttccacatggatgctggcccatgttgactccaatgcttcccacagtcaaattagctggatgtcctttgggtggtggacccttcttgatacacacggggaactgttgagcatgaaaaccccagcagcgttgcagttcatgacacaaactggtgtgcctggcacctactaccataccccattcaagggcacttaaatcttttgtcttgcccattcaccctctgaatggcacccatacacaatccatgtctcaattgtctcgaggcttaaaaataattctataacctgtctcctccccttcatctacactgattgaagtagatttaactagtgacatcaataagggaggCTTTCACCTGgtgagtctatgtcatggaaagagtaggtgttcttaatgttttgtacactcagtgtactatACTGTCTTGTAAGAATGTTGAAAAATATCTGTGTAATGACTGTGGGTGTCTTAAACTTGGTTTATAGTTTGTTTGTTAGTTAAACATCATTACAAATTGGCATGGAACAATCAAGAGACAGTCATACagtacatcaaaactataaacCAAATAAATGGAATTGTGGTGTTTTCTGATTTCAAATGGCATCAGATAGAATACTGTTACCAATTATTTTAATCAATGTATAAAAACTAGCAAtcatgagtttaaaaaaaaaaactttcaatCAAACTAGATGCAATGGTGTTCTTTGTTATTATCATGTGACCTGGAAAGTACAGTAGGGGGTAGAACACAGTGGTCAACCTCTTGAAAACACTGACTAGATGTGCAATACTATAACGATAAAAACAATGAGTATTTTACGGTTGGATATGGTACATTTTAGTTTATTAAATGTGCActttgaaataaataattctggtTATTTTCCAAAGGTATAAGAAAATGAAAATGCCTGCTGTGAACATGCCTAGGtgaaaaatacatttcaacttgTAGTTGTGCTAATGCATTGGgttattttaaaatgttgaatATATTGAAGTCCTGCTGAATTATTTTGTACAAAGTAGAGTCTCCTTATATTTAGAGTTTTCCTTGTATAACCTATTTTAACTGAACTAATGTTATTTTTTATCATTGACAATGATACTGTTTTAGCGCAGTGATTCAGATGAGGACTAGAATTCAAAGAAAAGTAGGTAGAGATTCAGGGACGGTTTCCCGGACCCATATTAAGCCTACACCTGAGCTATGGCATCCTTAATGGTGCATCTCCATTCAAAGTGCTTTGTAGTCTAGGAATCGGTTTAATCTGGGCCAGGGAACGTTTTTGTCAGGTTTACCTCCAAATCCACCTAAGGGAGCATTATACCCTCTCATTTTCACACTGTCTTTACATGTCTACCAAAGATACCTCTCTGCAGCCTCAGTGGTACTTCACACGAGATCTAGAGTTCCTGAGGAGGGTTTGGGAGAGGGTTGACTAGTGAAGAGCTGCAGAACAGGACAATGATAATCACTGCAAGTTTCTATTATATTGTCCTTAGCCGGCACTCTATCTGTTGGCTTAGAATAAACAAGTTGAGAGAGGGAATTGCATCGACTTAGGGTTTAAAAATTCTGGAAAATGTCCCCAAATTACCATGctttccaggaatcccagttggAATATTACTGGAAGCAGAAAATCCGGAATCCTTGTTACAGGAATTCTGGAATTCTGGTAAAGTGATCTGAAATTTTGCAATCCTATGTAGACTCAAGATAAAAATATATTTCTACATCATAATTTGGTTTTGCATCAGCACAATCCTATCAGACATAATATTGTTTTAATGTTATAATCCCTCAGTAGACTAGTGTATGGTGGGTTTAATAAATAATATAGATTTATGAATTAATGTGGTCTGCTATGCAGCAATATTAAGATAATGATAAGTGGTTGGTCCCTGATTGGTGTATCAGATTAAAGTGATTGATTTTGTTTGAAGTTGTGGAAGGCCAGTCAAGGCAGAATATTTAGATTTTTAGATCTCAGTTCGCAACTTTGAATTTCAGTTCAATGTGTATGACAAACAATACAACCTTATTTGAGCAATAATGAAAACATTTGAAAATAATTCAATGTTGAAATCAATGTGGGCAGCTACAGACAGAAAAAGTAAGTGATGTTTTTCGGTTTGTTTTGATGTGTTCTCCTGTCTTTCCATATAGGATCACTGGATATTCAAGTGACATGTTTTTCATGATTTGCCTACGTACCGTTATACTGGTGAACCTAGCTTCTTTAATGCATGGGATGAGATGATGATGAGAAGATGGTGTAGCAGTAACATGCAGCTCAGTGTTGATTGCAATGGGTGCGTTCCAGGTTGTTGCAGTCATGCTTCACATCTCAAAAGATCGCTATAAATCAATAGCAATATCATATCAGTGTGGTTCCGGAGATGTGCAAACATGTCTCCAGGGGTCGTATTCACTAGAAACCAAACTGAAGaaacaaacagggagggactaccttaACTTAATTTTTTCTTTGCAAGACATTTTCCTACGGTGTGTGCACCAATGAATACTAGCGATCCAGGTGGTAAGATCTGACAATCTGAGCATGTGACTGCAATGAAGACGACCTGGAACGTCCCCAATGACTCCAGTGTTAGGAACACCCAGACAGCCTCTGCAATGTCCTTCTGTTAGCTCCCTTACTGTCTCATGGCCATGCATATGGATCGGTCTCTGTAAGCATGTCTTCTGTATTTCTGTTGTTACTCCCAATTAAGACTGAATATTTTTTATCACAGAATGAAGACTGGTGTA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU621971 lncRNA upstream 135 78908474 ~ 78909743 (+) True LOC110506124
TU622044 lncRNA upstream 1916 78907695 ~ 78907962 (+) True G549405
TU622004 lncRNA upstream 60093 78844934 ~ 78849785 (+) True G549370
TU622001 lncRNA upstream 86896 78822764 ~ 78822982 (+) True G549368
TU621994 lncRNA upstream 96567 78813084 ~ 78813311 (+) True G549362
TU622045 lncRNA downstream 368 78913069 ~ 78913410 (+) True G549406
TU622052 lncRNA downstream 6857 78919558 ~ 78919879 (+) True G549413
TU622254 lncRNA downstream 42630 78955331 ~ 78955681 (+) True G549595
TU622277 lncRNA downstream 69954 78982655 ~ 78983233 (+) True G549618
TU622293 lncRNA downstream 94357 79007058 ~ 79007728 (+) True G549634
XM_036981014.1 mRNA upstream 541 78763607 ~ 78909337 (+) False LOC110506124
XM_036981011.1 mRNA upstream 233720 78657110 ~ 78676158 (+) False LOC110526640
XM_036981012.1 mRNA upstream 233720 78657110 ~ 78676158 (+) False LOC110526640
XM_021607780.2 mRNA upstream 397894 78502951 ~ 78511984 (+) False LOC110526639
XM_036981784.1 mRNA downstream 176891 79089592 ~ 79354959 (+) False LOC110526645
XM_021586631.2 mRNA downstream 612108 79524809 ~ 79531505 (+) False LOC110506775
XM_021586632.2 mRNA downstream 612108 79524809 ~ 79531505 (+) False LOC110506775
XM_036981020.1 mRNA downstream 630378 79543079 ~ 79570938 (+) True LOC110506774
XM_036981021.1 mRNA downstream 659137 79571838 ~ 79577990 (+) False LOC118936661
TU621977 other upstream 137321 78772112 ~ 78772557 (+) True G549345
TU621974 other upstream 139971 78769256 ~ 78769907 (+) True G549342
TU621269 other upstream 413408 78420860 ~ 78496470 (+) True G548703
TU620991 other upstream 1044010 77862068 ~ 77865868 (+) False LOC110526615
TU620974 other upstream 1092817 77814375 ~ 77817061 (+) True LOC110526614
TU622349 other downstream 238663 79151364 ~ 79163031 (+) False LOC110526645
TU622771 other downstream 566780 79479481 ~ 79480078 (+) True G550054
TU622790 other downstream 659178 79571879 ~ 79577990 (+) False LOC118936661
TU622792 other downstream 659178 79571879 ~ 79577990 (+) False LOC118936661
TU622793 other downstream 659178 79571879 ~ 79577990 (+) True LOC118936661

Expression Profile