RNA id: TCONS_00032886


Basic Information

Item Value
RNA id TCONS_00032886
length 568
lncRNA type retained_intron
GC content 0.53
exon number 5
gene id XLOC_016775
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 43807230 ~ 43852207 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCACACAAGACGATGGCAGCCTGGGGCCAGAAACTTTAATACGAGAAATAAGGGTCAAAGaggAGTGCGTCAGTGATGAGGAAGATGGTGCTCAAGATGAAGCAACCAGTGAGGAAAAGCAGACCAAAACCGAGCCTGTTTACCCAGATGCAGCAGAGGAGCATCAGAGAACGCCGGAGCGAGGAGTCCACGATGAGAACGGCACCCCTGATGCGTTTTCACACCTGCACAACTGTCCGCACTGCTCTCGCGGCTACAAGCGGCACACGTCTCTGAAGGAGCACATCAAACTACGCCATGAGAAGAACGACGACAACTACTGCTGCTCCCTCTGCAGCTACACCTTCACCTACCGCACGCAGCTCGTCCGTCACATGACAGCACACAGACAGCTCCGAGAGAAGCGGACTGTTACGCAGTCGGGAAGCAGGAAGTTTAAGTGCACAGAATGCTCCAAGGCCTTCAAATACAAGCATCACCTGAAGGAGCACCTGCGCATCCACAGCGGTCAGTTGACAAAGCACAGCCGCATACAGAAAGCATTTGCTAACTGCATGTGGATACTAA

Function

GO:

id name namespace
GO:0048745 smooth muscle tissue development biological_process
GO:0070587 regulation of cell-cell adhesion involved in gastrulation biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-124 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including regulation of cell-cell adhesion involved in gastrulation; regulation of gastrulation; and smooth muscle tissue development. Is expressed in hypoblast and neural plate. Human ortholog(s) of this gene implicated in Fuchs' endothelial dystrophy and posterior polymorphous corneal dystrophy 3. Orthologous to human ZEB1 (zinc finger E-box binding homeobox 1).

Ensembl:

ensembl_id ENSDART00000132251

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033928 lncRNA downstream 117662 43707467 ~ 43707953 (-) False XLOC_016773
TCONS_00033401 lncRNA downstream 195532 43629753 ~ 43630083 (-) True XLOC_016770
TCONS_00033927 lncRNA downstream 253855 43569686 ~ 43571760 (-) True XLOC_016766
TCONS_00033926 lncRNA downstream 253945 43568074 ~ 43571670 (-) False XLOC_016766
TCONS_00033925 lncRNA downstream 253959 43567145 ~ 43571656 (-) False XLOC_016766
TCONS_00032904 lncRNA upstream 441032 44276534 ~ 44282837 (-) True XLOC_016781
TCONS_00032909 lncRNA upstream 565578 44401080 ~ 44406125 (-) False XLOC_016785
TCONS_00032910 lncRNA upstream 568253 44403755 ~ 44406122 (-) True XLOC_016785
TCONS_00033929 lncRNA upstream 726512 44562014 ~ 44563193 (-) True XLOC_016787
TCONS_00033930 lncRNA upstream 1208980 45044482 ~ 45045520 (-) True XLOC_016796
TCONS_00032882 mRNA downstream 80440 43743245 ~ 43745175 (-) True XLOC_016774
TCONS_00032881 mRNA downstream 80469 43742574 ~ 43745146 (-) False XLOC_016774
TCONS_00032879 mRNA downstream 85875 43705593 ~ 43739740 (-) False XLOC_016773
TCONS_00032880 mRNA downstream 86056 43709727 ~ 43739559 (-) True XLOC_016773
TCONS_00032878 mRNA downstream 127084 43678039 ~ 43698531 (-) True XLOC_016772
TCONS_00032888 mRNA upstream 105423 43940925 ~ 43942595 (-) True XLOC_016776
TCONS_00032889 mRNA upstream 126124 43961626 ~ 44038776 (-) False XLOC_016777
TCONS_00032890 mRNA upstream 127476 43962978 ~ 44038698 (-) True XLOC_016777
TCONS_00032891 mRNA upstream 213579 44049081 ~ 44183613 (-) False XLOC_016778
TCONS_00032892 mRNA upstream 213645 44049147 ~ 44183451 (-) True XLOC_016778
TCONS_00032856 other downstream 863271 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032848 other downstream 1120682 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032837 other downstream 1409827 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032833 other downstream 1450506 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032811 other downstream 1878719 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032894 other upstream 357297 44192799 ~ 44199697 (-) False XLOC_016779
TCONS_00032911 other upstream 687354 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032916 other upstream 922547 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032917 other upstream 927580 44763082 ~ 44763375 (-) True XLOC_016791
TCONS_00032918 other upstream 938773 44774275 ~ 44774595 (-) True XLOC_016792

Expression Profile

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