RNA id: TU622309


Basic Information

Item Value
RNA id TU622309
length 248
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G549649
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 79019851 ~ 79020098 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactgaccacccctcatagcctggttcctctctaggtttcttcctatttTTTGGCatttccagggagtttttcctagccacagtgcttctacacctgcattgcttgctatttggggttttaggctgggtttttgtacagcactttgagatatcagctgatgtacgaagggctatataaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU622300 lncRNA upstream 6046 79012728 ~ 79013805 (+) False G549641
TU622301 lncRNA upstream 6046 79013037 ~ 79013805 (+) True G549641
TU622295 lncRNA upstream 10908 79008503 ~ 79008943 (+) True G549636
TU622293 lncRNA upstream 12123 79007058 ~ 79007728 (+) True G549634
TU622277 lncRNA upstream 36618 78982655 ~ 78983233 (+) True G549618
TU622316 lncRNA downstream 5199 79025297 ~ 79025556 (+) True G549656
TU622323 lncRNA downstream 10661 79030759 ~ 79031721 (+) True G549663
TU622326 lncRNA downstream 17197 79037295 ~ 79038815 (+) False G549666
TU622327 lncRNA downstream 17197 79037295 ~ 79038815 (+) True G549666
TU622345 lncRNA downstream 60072 79080170 ~ 79080479 (+) True G549682
XM_036981014.1 mRNA upstream 110514 78763607 ~ 78909337 (+) False LOC110506124
XM_036981011.1 mRNA upstream 343693 78657110 ~ 78676158 (+) False LOC110526640
XM_036981012.1 mRNA upstream 343693 78657110 ~ 78676158 (+) False LOC110526640
XM_021607781.2 mRNA upstream 507867 78502951 ~ 78511984 (+) False LOC110526639
XM_036981784.1 mRNA downstream 69494 79089592 ~ 79354959 (+) False LOC110526645
XM_021586631.2 mRNA downstream 504711 79524809 ~ 79531505 (+) False LOC110506775
XM_021586632.2 mRNA downstream 504711 79524809 ~ 79531505 (+) False LOC110506775
XM_036981020.1 mRNA downstream 522981 79543079 ~ 79570938 (+) True LOC110506774
XM_036981021.1 mRNA downstream 551740 79571838 ~ 79577990 (+) False LOC118936661
TU621977 other upstream 247294 78772112 ~ 78772557 (+) True G549345
TU621974 other upstream 249944 78769256 ~ 78769907 (+) True G549342
TU621269 other upstream 523381 78420860 ~ 78496470 (+) True G548703
TU620991 other upstream 1153983 77862068 ~ 77865868 (+) False LOC110526615
TU620974 other upstream 1202790 77814375 ~ 77817061 (+) True LOC110526614
TU622349 other downstream 131266 79151364 ~ 79163031 (+) False LOC110526645
TU622771 other downstream 459383 79479481 ~ 79480078 (+) True G550054
TU622790 other downstream 551781 79571879 ~ 79577990 (+) False LOC118936661
TU622792 other downstream 551781 79571879 ~ 79577990 (+) False LOC118936661
TU622793 other downstream 551781 79571879 ~ 79577990 (+) True LOC118936661

Expression Profile