RNA id: TCONS_00032888


Basic Information

Item Value
RNA id TCONS_00032888
length 993
RNA type mRNA
GC content 0.42
exon number 5
gene id XLOC_016776
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 43940925 ~ 43942595 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAGCAAGAACGATCGCTGATTCTGTCCGACTGAACAAACTGTCTATATGAAGAAAGACGAACTGAGTTTGGAAAATACCAGTACAACTGTGATGGAGAAGCCAAAGAAAAACCGGCTCTTAAAACTGCCCTCTTTCCTAAAAGCTTCCAAGAAAAACAAGAACTTCCGAAGTCAGAAAGAGACACAGCTCAAGCAAACGCCTGAAATTGGCAATGATTATGAGGTGGAGGAGGTTGAAGGAATGACACAGAGGAAAAAGAGTAAAGTGGCAAATTTCCTCAAAGCTGCCAGAAGACTCTTCAGGATGTCCTGCTTTGGTCAGACTGAGGAGCAGCTCTCTGTCTCTGCAGACTCTGATGACGACATTCTATGCCCATCTGGGTCTGTCCAGAGTCTGGAGGTTGCTTGTGTCATCATTCATAATCATGAAGCGAGTTGTGTGAATGACAACCTAAAGCTGGATGAGAAAGATGACGTGAAGACACATAACACAGAGTGTGTCAAAaaagaggaggaggtggaggagatgGGAATGAATGAAGAGAAGGAAAATGAGGAAAAGATTaagaagaggaggagaaagaGAAATACACAGATAAAAGAGGAAGAGgagaaggaagaggaggaggtggTGAAAGAAGTGATGAAAATAAAAGAGGAGAGTTTgaaagaaaaggaggaggaggataaGAATGAGGCAATGAAGATAAAAGAGAGGATGAATGAAAAAGAAGCAGAAGAGAAGGAACACACGAGGAAGAGAAAGAGGAGAAAGAGAAATTGCAGGATAAAAGTGGAAGAGAAGAAAGAGGAGATTGAGGGAGAGATGAAGATAAAGGAGGAGAggataaaagaaaatgaaaaggagGATAAGAATGAAGAGGAGATGGAGGAAgaaatggaggaggaggaggtagaAAAGCCAAAGGAGAAGAAGAATAAGAGAAACAAGAAAAGAGACAGCAGGAAAAGCAGAAGGATGATGCGGAGGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-175 No description available

Ensembl:

ensembl_id ENSDART00000147925

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032886 lncRNA downstream 105423 43825615 ~ 43835502 (-) False XLOC_016775
TCONS_00033928 lncRNA downstream 232972 43707467 ~ 43707953 (-) False XLOC_016773
TCONS_00033401 lncRNA downstream 310842 43629753 ~ 43630083 (-) True XLOC_016770
TCONS_00033927 lncRNA downstream 369165 43569686 ~ 43571760 (-) True XLOC_016766
TCONS_00033926 lncRNA downstream 369255 43568074 ~ 43571670 (-) False XLOC_016766
TCONS_00032904 lncRNA upstream 333939 44276534 ~ 44282837 (-) True XLOC_016781
TCONS_00032909 lncRNA upstream 458485 44401080 ~ 44406125 (-) False XLOC_016785
TCONS_00032910 lncRNA upstream 461160 44403755 ~ 44406122 (-) True XLOC_016785
TCONS_00033929 lncRNA upstream 619419 44562014 ~ 44563193 (-) True XLOC_016787
TCONS_00033930 lncRNA upstream 1101887 45044482 ~ 45045520 (-) True XLOC_016796
TCONS_00032885 mRNA downstream 88718 43807269 ~ 43852207 (-) False XLOC_016775
TCONS_00032883 mRNA downstream 89010 43807230 ~ 43851915 (-) False XLOC_016775
TCONS_00032884 mRNA downstream 90028 43807269 ~ 43850897 (-) False XLOC_016775
TCONS_00032887 mRNA downstream 90288 43825729 ~ 43850637 (-) True XLOC_016775
TCONS_00032882 mRNA downstream 195750 43743245 ~ 43745175 (-) True XLOC_016774
TCONS_00032889 mRNA upstream 19031 43961626 ~ 44038776 (-) False XLOC_016777
TCONS_00032890 mRNA upstream 20383 43962978 ~ 44038698 (-) True XLOC_016777
TCONS_00032891 mRNA upstream 106486 44049081 ~ 44183613 (-) False XLOC_016778
TCONS_00032892 mRNA upstream 106552 44049147 ~ 44183451 (-) True XLOC_016778
TCONS_00032893 mRNA upstream 250057 44192652 ~ 44199840 (-) False XLOC_016779
TCONS_00032856 other downstream 978581 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032848 other downstream 1235992 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032837 other downstream 1525137 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032833 other downstream 1565816 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032811 other downstream 1994029 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032894 other upstream 250204 44192799 ~ 44199697 (-) False XLOC_016779
TCONS_00032911 other upstream 580261 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032916 other upstream 815454 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032917 other upstream 820487 44763082 ~ 44763375 (-) True XLOC_016791
TCONS_00032918 other upstream 831680 44774275 ~ 44774595 (-) True XLOC_016792

Expression Profile

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