RNA id: TU622450


Basic Information

Item Value
RNA id TU622450
length 1397
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G549779
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 79355049 ~ 79356445 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggccgACAGTTGAGGAGTTGTGTTGTCTGTTTTTGTGCATGTGCGTAAAACATCTGTTGGAATGTTCATTTTAAACTACAGTATGTACCAGTGTTTACTTACCGTATGCTCAATATTAAGTACTATATTCTACGAGTTATGTTAACGAGACATGAAATACCTTTTTGTAAAACATTTAGATTTGTTCCAATAAAGTGCcaaaccagaggaaaaaaaagtacaacaacaaaacaaacaacaaaagatAGTAGTGATGAATTATGGTGATACTAAATGTTTGATGAAAAATTTGCTTGATTATTTGGTTCAGTGTAAAATCATTCTCTCAAAGAAACGGTGGCGTTTTAATCGTTAAAAAGTCCATTTGCACCCTCGTTTTGTTACTCGTCCCCTCACACAGCACTTGTTGTGCATGTCCCCGTTTACAACCATGTCTCTTCCATCATCTCACAGTGACCACAGGGTCGGGGTCCATGTACCCTGGCCCTAAAACTCTTTGTATTTAAGCCGAAACCTGAAAAGAGACCATTTTTTTAACGGCGATGACTGCTATGTAAACCTTCATAGGTGTTTGTAATTTTATAACCATGACAACAACGAAAAGCCTCCAGTGCTGTCAGTCTACACAGAAAGGGTGGATCCTATTTTCTCGTTTTCTTTTTGCCTGTAATCTTTCCGTTCGGCCATCGGCTTCCAGCCTTTCTGTACGACCACTGTGAACACGAGCTTTGGAAGGCAAGCCTACATAACATTGCTGACGGTTTGATATTGTTGTTTCATATTTATTAAGATAACTTTGTTCCTGAGAAACTGCCAAAGTTATATAAAAATGTTTGTACAAAAGCAATCCATTACATGtatgaaaaatatatatgtacACGTCAACTATTTAGTTTTACAATGCTAAATATCTGATTGTTGATGGGCGGTTCTAGAACTATTGTTTTGAGTTTGTGTGAAGATTTCAGAGTCGCAAAATGTTACTTTACACATGAGTTTAATTCAGCTTCTGCCATTTGGTTTATTTTTCTTCATAAAGGAACGAGTCTAACATTGGGTAAATATGCAACATTCCTATGTATTGCACTGATGGCGAATTGTATGTCATGTAaatatatttagtgagaaattgTACAAAACAACCGTCTCCTTTATTTCCAACACATTGTTcaaagtgtttttttgttgttgtttagtaATCTGATACATTCATTCAGTGATATAATCCTATATGGTGTAgcctctatatacagtatctattgCCAGAAGAAATGTCACGTCTCAAATGGAATGACAGAGTAATGTACCGTATggcccacagagatcctataaaTCACTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU622524 lncRNA upstream 8965 79345671 ~ 79346084 (+) True G549841
TU622521 lncRNA upstream 10038 79337127 ~ 79345011 (+) False G549840
TU622520 lncRNA upstream 10038 79339649 ~ 79345011 (+) True G549840
TU622516 lncRNA upstream 30091 79322931 ~ 79324958 (+) True G549837
TU622457 lncRNA upstream 72071 79278457 ~ 79282978 (+) True G549783
TU622675 lncRNA downstream 18535 79374980 ~ 79375277 (+) True G549974
TU622685 lncRNA downstream 34945 79391390 ~ 79401647 (+) True G549983
TU622694 lncRNA downstream 56179 79412624 ~ 79412942 (+) True G549992
TU622699 lncRNA downstream 57837 79414282 ~ 79414492 (+) True G549997
TU622702 lncRNA downstream 59354 79415799 ~ 79416011 (+) True G550000
XM_036981784.1 mRNA upstream 90 79089592 ~ 79354959 (+) False LOC110526645
XM_036981014.1 mRNA upstream 445712 78763607 ~ 78909337 (+) False LOC110506124
XM_036981011.1 mRNA upstream 678891 78657110 ~ 78676158 (+) False LOC110526640
XM_036981012.1 mRNA upstream 678891 78657110 ~ 78676158 (+) False LOC110526640
XM_021607783.2 mRNA upstream 843065 78502951 ~ 78511984 (+) True LOC110526639
XM_021586631.2 mRNA downstream 168364 79524809 ~ 79531505 (+) False LOC110506775
XM_021586632.2 mRNA downstream 168364 79524809 ~ 79531505 (+) False LOC110506775
XM_036981020.1 mRNA downstream 186634 79543079 ~ 79570938 (+) True LOC110506774
XM_036981021.1 mRNA downstream 215393 79571838 ~ 79577990 (+) False LOC118936661
XM_036981023.1 mRNA downstream 215393 79571838 ~ 79577990 (+) False LOC118936661
TU622349 other upstream 192018 79151364 ~ 79163031 (+) False LOC110526645
TU621977 other upstream 582492 78772112 ~ 78772557 (+) True G549345
TU621974 other upstream 585142 78769256 ~ 78769907 (+) True G549342
TU621269 other upstream 858579 78420860 ~ 78496470 (+) True G548703
TU620991 other upstream 1489181 77862068 ~ 77865868 (+) False LOC110526615
TU622771 other downstream 123036 79479481 ~ 79480078 (+) True G550054
TU622790 other downstream 215434 79571879 ~ 79577990 (+) False LOC118936661
TU622792 other downstream 215434 79571879 ~ 79577990 (+) False LOC118936661
TU622793 other downstream 215434 79571879 ~ 79577990 (+) True LOC118936661
TU623015 other downstream 712303 80068748 ~ 80069285 (+) True G550265

Expression Profile