RNA id: TCONS_00032890


Basic Information

Item Value
RNA id TCONS_00032890
length 2525
RNA type mRNA
GC content 0.53
exon number 15
gene id XLOC_016777
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 43961626 ~ 44038776 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCGCTGAATGAACGCAGACCGCGAGGACGCGCGCGACATTATCAGCACCGGTTCGCGGGGTTTCAGAGTCCGGCGTAAAGAAGATGAATTGACGGTGTGTTTTCTGAGTGACAGAGGTGGAGATGGGCTTCAGCATGACCTGCCTCTGGATTGTAACTCTGGCCATCATCAGCGTTCACAGAGTGTTCAGCGGGCCACGGTTTTCACAGGAGCCAGCGGATCAGTCTGTGGTGATCGGCGAGAGGGTGGTTCTGTCCTGCGTCGTGTTTAACTACACCGGCATCGTACAATGGACCAAAGACGGCCTCGCTCTTGGAATCGGAGAGGATCTAAGGGcATGGCCACGGTACCGTGTTTTGCGTATAATGGATGTTGGGCAGTATAATCTGGAGATCACGTCGGCGGATCTGACCGATGACTCCCTGTACGAGTGTCAGGCCACTGAAGCCGCTCTGAGGTCCAGAAGAGCTAAACTCACCGTTCTGAttCCTCCTGATGGTCCCGTAATTGAGGGATCTCCAGAGATCCTGTTGACGGCAGGAACCTCATTTAACCTCACCTGTGTGTCTCGAGGAGCAAAGCCAATGTCAACAATTGAATGGTACAAAGATGGGATCATAGTGGAAGGAGCTCATACCAGCACTGAGGTGTTATCGGACAGGAAAAGGGTGACCACAAAAAGTTTTTTGGAGATCCAGCCAATGGACACAGACACTGGACGTAACTTCACTTGCGTGGCCTCAAACCTGGCTGCTCCACTGGGGAAGAGATCAACTGTCACCCTCAACATCCACCATCCTCCTACGGTGATTTTGTCCATAGAGCCTCGCTCAGTTCTTGAAGGAGAGCGAGTTAAGTTCACCTGCCAGGCAACTGCCAACCCTCCTATAATGGGCTACAGGTGGGCTAAAGGTGGCGTGATTCTAGACGGAGCAAGAGAAAGTGTGTTTGAGACGACAGCAGATCACTCATTCTTCACCGAGCCTGTGTCCTGCCTGGTGTTTAATGCAGTGGGCAGCACTAACGTCAGTATATTAGTGGACGTTCACTTTGGCCCAATTTTGGTGGTGGAGCCAAGGCCTGTAACAGTGGACGTTGACTCAGATGTCACACTTAACTGTAAATGGTCAGGAAATCCTCCGCTTACCCTCACTTGGACCAAAAAAGGCTCCAGTATGGTCCTCAGTAACAGTAATCAGCTGTTCCTGAAGTCTGTGAGTCAAGCAGATGCAGGACAGTACGTGTGTAAAGCCATCGTCCCCAGAATTGGTGTTGGGGAGACTGAGGTCACACTCACTGTCAATgGTCCTCCAATCATCTCGAGTGAGCCGATCCAGTATGCCGTGAGAGGAGAGAAAGGGGAAATCAAGTGCTACATAGCCAGCACTCCACCGCCAGACAAAATCGTTTGGGCCTGGAAGGAGAACGTGTGGGAGAAGGAGCGAGGGACACTGCTGGAGAGATACACGGTTGAGCAGAGCAGACCTGCAACACAAGGGGGTGCCGTTCTATCCACACTCACCATCAACAATGTAATGGAGGCTGACTTCCAGTCCACGTACAACTGCACGGCATGGAACGCTTTTGGACCAGGAACCATGATCATTACCCTGGAAGAGACAGATATAGTGCCTGTAGGTGTGATAGCAGGCGGATCTGTTGgatcttccattttgcttctgcTTCTCCTCTTTGCTCTGATTTTCTATCTGTATCGACAACGCAAAAGCAGTCGTCGTGGAGTGACACTCAAGCCAGACATTAAGGTGGAAACGGTGAACAAGGAGACCAATCTGGAGGAGGAGGCCGCCAGCGCTTCAACAGCCACGCGAATGTTTCTTCCCTctgtctccctctctccctccacCCAGCCCTTCAAAGACGACATGGACCTGAAGCAAGACCTCCAGACCGAAACGCTGGAGCCCAAGGTGGAGGAGTATGAGGCCAAGGACCCCACGAATGGCTACTACAATGTCCGAGCCACGACTCATGATGAGGTGCGCTCTTCCACCCGCTCACTGCTCTACCAGGAATTCCGGGCACCTAATCCTGCATCAGTTTCAGCATCGACCGGCGGCCCTGCCAACATTCATCCCGCTCCTACAGGACGTTATGAGGCCCGTCCCACTTCCCGAATGGCTCACAACACCTATGCTCATTTCAACACAATCGCAAGGGCATCACAAATCCAGCCTCCAGCCAACCCCGTCTCCAAAACCACAGACTATCCTGCAGAGCGTGGCCTGCTGGAGTCCACCAATCCACTAGCTTTTGACAGCTACGCCTACTCAACCACACCTCAATACCGGTTAGGCTTTGCTCCGCCTTTGGAGGCGGGACCAGCCTATGAAATGTATCCAACGGGACAAGGGGTGGGGACGAGTCAAGATGCTAATGTAGGCAAATACCCAAGCTCCGCCCAGTTTCCATATTCAACCCCGCCCACGGAATACTCTCAAAGACACACGCAACGAATGCAGACTCATGTGTGAGGCTAAAAGAAAGCACTTCCTTGAACGCA

Function

GO:

id name namespace
GO:0032836 glomerular basement membrane development biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0039022 pronephric duct development biological_process
GO:0072015 glomerular visceral epithelial cell development biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005911 cell-cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0050839 cell adhesion molecule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-173 Predicted to enable cell adhesion molecule binding activity. Acts upstream of or within glomerular basement membrane development; glomerular visceral epithelial cell development; and pronephric duct development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell-cell junction. Predicted to be integral component of plasma membrane. Is expressed in brain and pronephric glomerulus. Human ortholog(s) of this gene implicated in nephrotic syndrome type 23. Orthologous to human KIRREL1 (kirre like nephrin family adhesion molecule 1).

Ensembl:

ensembl_id ENSDART00000079582

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032886 lncRNA downstream 127476 43825615 ~ 43835502 (-) False XLOC_016775
TCONS_00033928 lncRNA downstream 255025 43707467 ~ 43707953 (-) False XLOC_016773
TCONS_00033401 lncRNA downstream 332895 43629753 ~ 43630083 (-) True XLOC_016770
TCONS_00033927 lncRNA downstream 391218 43569686 ~ 43571760 (-) True XLOC_016766
TCONS_00033926 lncRNA downstream 391308 43568074 ~ 43571670 (-) False XLOC_016766
TCONS_00032904 lncRNA upstream 237836 44276534 ~ 44282837 (-) True XLOC_016781
TCONS_00032909 lncRNA upstream 362382 44401080 ~ 44406125 (-) False XLOC_016785
TCONS_00032910 lncRNA upstream 365057 44403755 ~ 44406122 (-) True XLOC_016785
TCONS_00033929 lncRNA upstream 523316 44562014 ~ 44563193 (-) True XLOC_016787
TCONS_00033930 lncRNA upstream 1005784 45044482 ~ 45045520 (-) True XLOC_016796
TCONS_00032888 mRNA downstream 20383 43940925 ~ 43942595 (-) True XLOC_016776
TCONS_00032885 mRNA downstream 110771 43807269 ~ 43852207 (-) False XLOC_016775
TCONS_00032883 mRNA downstream 111063 43807230 ~ 43851915 (-) False XLOC_016775
TCONS_00032891 mRNA upstream 10383 44049081 ~ 44183613 (-) False XLOC_016778
TCONS_00032892 mRNA upstream 10449 44049147 ~ 44183451 (-) True XLOC_016778
TCONS_00032893 mRNA upstream 153954 44192652 ~ 44199840 (-) False XLOC_016779
TCONS_00032895 mRNA upstream 154101 44192799 ~ 44199722 (-) True XLOC_016779
TCONS_00032896 mRNA upstream 164377 44203075 ~ 44255537 (-) False XLOC_016780
TCONS_00032856 other downstream 1000634 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032848 other downstream 1258045 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032837 other downstream 1547190 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032833 other downstream 1587869 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032811 other downstream 2016082 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032894 other upstream 154101 44192799 ~ 44199697 (-) False XLOC_016779
TCONS_00032911 other upstream 484158 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032916 other upstream 719351 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032917 other upstream 724384 44763082 ~ 44763375 (-) True XLOC_016791
TCONS_00032918 other upstream 735577 44774275 ~ 44774595 (-) True XLOC_016792

Expression Profile

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