RNA id: TCONS_00032891


Basic Information

Item Value
RNA id TCONS_00032891
length 1775
RNA type mRNA
GC content 0.55
exon number 10
gene id XLOC_016778
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 44049081 ~ 44183613 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aataacaaaactctCTCAGTCAGTATGGTCTGGTCCTGTTATTCAAATGGTATGGCCAAATCGTATTAAAATCCCCACCCCTCCCCCTCCGCCCCGCGCGCCTGCCccttccctccctcccttcctcACTTCCTCTCCCTCCCTTTCTCCGTGCTTTCAGACAGACTGTTTTGCTGCAGTGAACGGTAGCCGTGGAGAGAGGAAAAGGCAAGAAAAACAAGAAGACAGCGGAGGGCGGAACGAGAACCAAGACAGACAGATCCATTGGGACCTTAGCGTGAGCGCCAGCAGgcacagacgcttccaacactcCTGAACCGACGGAGCCATCGGGCATCACGAGGAGCGCTTATATCGTCAGCGCTTCAGTGAGCTTCTCCACTTCTCCGGGCCTCAAGAGGACTATTGGCTGTAGCGTGCTGGACGGATGAGCGGGATGCGCGCGCGTCAGACTCTGGCATTCCCGTCATTCCAGCGGGCAGCTCTCCGGGCGCTCGCGGCCTTCACGATGATTCTCGCGACCTCCGTGCGGAGCAACTACGTTTATGATGATGACCCCTTTCAGCCGGTGACCCAAGATGAGACGGTGGCAGTGGGCGGGGTGGTAACCCTGACCTGCGGCGTGAAGGAAAATGATAACTCCTCCCTCCAGTGGTCCAACACGGCCCAGCAGACCCTGTACTTCGGAGAGAAAAGAGCACTGAGAGATAACCGTATCCAGTTGGTAAAGTCCACGGCCACGGAGCTGATAATCACCATCGGGGATGTTCAGCTGTCAGATGATGGAGAATATACCTGTTCCATTTTTACCATGCCTGTACGGACCGCACGAGCCACAGTTACTGTACTcgGTGTTCCAGGTAAGCCGGTGATAACAGGTTTCGAAGGTGCTGTTCAGGAGGGTGGCAAGGTAACTCTTACCTGCACGAGTTCAGGCAGCAAACCTCCTGCCAAACTACACTGGTACCGTGACCATGTGGAGATTCAagGGCGTCCTGATGTCGTGGAGTCCAATCCTAATGAACCGACCTACACAGTGACTAGCGAACTCACGCTGTCTGTCAGCAGAGACGACAACGATGCTCTGATCGCCTGCGCCGTGGACCATCCATCCATCGCCAATGGAGACAAGAGGACAGAGCAGCCCCTCAACGTCCTCTTTTCACCAAGAGTGTCGATTCATCCTGAAAGTGACCTGCCCAGAGAAGGAGAGAAGTTTTACCTGCAGTGTGTGGGGAACGGAAATCCAGagCCGAATGCGTTTGTGTGGCGGAGGAAAGAGGGAGAGCTCCCCCCGCTGGCCAAGGTGGATGGTGCGTTCCTGCGATTCGAGTCCCTCAACAAGTCGGATAACGGCGTTTACGAGTGCCAGGCTGATAATGGGATTGGCATGGGGGACGTAGCACACACCCTCCTGGTACAAGACCCTACAGCGATGTCCACTGGTTCGGGAGTCGACCATGCTGTGATTGGTGGAGTGGTCGCTGTCATTGTCTTCATCATGCTCTGTCTCCTCCTTGTCCTCGGCAGATACCTCATCAGACAcaaaggtACGTACCTGACTCATGAGGCAAAGGGATCAGACGATGCTCCGGATGCAGACACGGCCATCATTAACGCTGAGGGAGGCCACTCCGGGGTGGATGACAAGAAAGAGTACTTCATCTAGAGATCCATCCCTCCGTACCCTCTTCCTTCACACGCTTCAGTTCACTCAGCCTGACGGGGAAATAAACGGGGATGGCAAACGAGAGAGCAAATAtgtgaggaaaaaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
ko04514 Cell adhesion molecules
ko04515 Cell adhesion molecules

ZFIN:

id description
ZDB-GENE-060512-196 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in alar plate midbrain region; immature eye; nervous system; radial glial cell; and trigeminal placode. Orthologous to human CADM3 (cell adhesion molecule 3).

Ensembl:

ensembl_id ENSDART00000079596

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032886 lncRNA downstream 213579 43825615 ~ 43835502 (-) False XLOC_016775
TCONS_00033928 lncRNA downstream 341128 43707467 ~ 43707953 (-) False XLOC_016773
TCONS_00033401 lncRNA downstream 418998 43629753 ~ 43630083 (-) True XLOC_016770
TCONS_00033927 lncRNA downstream 477321 43569686 ~ 43571760 (-) True XLOC_016766
TCONS_00033926 lncRNA downstream 477411 43568074 ~ 43571670 (-) False XLOC_016766
TCONS_00032904 lncRNA upstream 92921 44276534 ~ 44282837 (-) True XLOC_016781
TCONS_00032909 lncRNA upstream 217467 44401080 ~ 44406125 (-) False XLOC_016785
TCONS_00032910 lncRNA upstream 220142 44403755 ~ 44406122 (-) True XLOC_016785
TCONS_00033929 lncRNA upstream 378401 44562014 ~ 44563193 (-) True XLOC_016787
TCONS_00033930 lncRNA upstream 860869 45044482 ~ 45045520 (-) True XLOC_016796
TCONS_00032889 mRNA downstream 10305 43961626 ~ 44038776 (-) False XLOC_016777
TCONS_00032890 mRNA downstream 10383 43962978 ~ 44038698 (-) True XLOC_016777
TCONS_00032888 mRNA downstream 106486 43940925 ~ 43942595 (-) True XLOC_016776
TCONS_00032885 mRNA downstream 196874 43807269 ~ 43852207 (-) False XLOC_016775
TCONS_00032883 mRNA downstream 197166 43807230 ~ 43851915 (-) False XLOC_016775
TCONS_00032893 mRNA upstream 9039 44192652 ~ 44199840 (-) False XLOC_016779
TCONS_00032895 mRNA upstream 9186 44192799 ~ 44199722 (-) True XLOC_016779
TCONS_00032896 mRNA upstream 19462 44203075 ~ 44255537 (-) False XLOC_016780
TCONS_00032897 mRNA upstream 19465 44203078 ~ 44255537 (-) True XLOC_016780
TCONS_00032898 mRNA upstream 75869 44259482 ~ 44282909 (-) False XLOC_016781
TCONS_00032856 other downstream 1086737 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032848 other downstream 1344148 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032837 other downstream 1633293 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032833 other downstream 1673972 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032811 other downstream 2102185 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032894 other upstream 9186 44192799 ~ 44199697 (-) False XLOC_016779
TCONS_00032911 other upstream 339243 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032916 other upstream 574436 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032917 other upstream 579469 44763082 ~ 44763375 (-) True XLOC_016791
TCONS_00032918 other upstream 590662 44774275 ~ 44774595 (-) True XLOC_016792

Expression Profile

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