RNA id: TU622902


Basic Information

Item Value
RNA id TU622902
length 258
lncRNA type intronic
GC content 0.43
exon number 1
gene id G550167
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 79778280 ~ 79778537 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tattggtactccctgtataaagcctccacattgactctgtattggtactccctgtataaagcctccacattgactctgtattggtactccctgtatatagcatccacattgactctgtattggtactccctgtataaagcctccacattgactctgtattggtactccctgtataaagcctccacattgactctgtattggtactccctgtataaagcctccacattgactctgtattggtactccctgtataaagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU622900 lncRNA upstream 4608 79768013 ~ 79773672 (+) True G550166
TU622897 lncRNA upstream 15604 79762103 ~ 79762676 (+) True G550164
TU622895 lncRNA upstream 26757 79750289 ~ 79751523 (+) True G550162
TU622808 lncRNA upstream 29709 79744995 ~ 79748571 (+) True G550084
TU622805 lncRNA upstream 41813 79735631 ~ 79736467 (+) True G550081
TU622906 lncRNA downstream 13300 79791837 ~ 79792072 (+) True G550171
TU622928 lncRNA downstream 61438 79839975 ~ 79840184 (+) True G550192
TU622931 lncRNA downstream 72629 79851166 ~ 79851365 (+) True G550195
TU622949 lncRNA downstream 103317 79881854 ~ 79882692 (+) True G550212
TU622963 lncRNA downstream 166183 79944720 ~ 79945040 (+) True G550222
XM_021607791.2 mRNA upstream 72676 79699361 ~ 79705604 (+) True LOC110526648
XM_036981061.1 mRNA upstream 79058 79672029 ~ 79699222 (+) False LOC110526647
XM_036981063.1 mRNA upstream 79058 79681311 ~ 79699222 (+) False LOC110526647
XM_036981064.1 mRNA upstream 79058 79681655 ~ 79699222 (+) True LOC110526647
XM_036981036.1 mRNA upstream 106749 79578524 ~ 79671531 (+) False LOC110511859
XM_036979143.1 mRNA downstream 78899 79857436 ~ 79860739 (+) False nrk2
XM_036979144.1 mRNA downstream 78903 79857440 ~ 79860739 (+) False nrk2
NM_001160654.1 mRNA downstream 78922 79857459 ~ 79860732 (+) False nrk2
XM_036979145.1 mRNA downstream 79705 79858242 ~ 79860739 (+) True nrk2
XM_036981059.1 mRNA downstream 108977 79887514 ~ 79898351 (+) False LOC110514990
TU622790 other upstream 200290 79571879 ~ 79577990 (+) False LOC118936661
TU622792 other upstream 200290 79571879 ~ 79577990 (+) False LOC118936661
TU622793 other upstream 200290 79571879 ~ 79577990 (+) True LOC118936661
TU622771 other upstream 298202 79479481 ~ 79480078 (+) True G550054
TU622349 other upstream 615249 79151364 ~ 79163031 (+) False LOC110526645
TU623015 other downstream 290211 80068748 ~ 80069285 (+) True G550265
TU623063 other downstream 421633 80200170 ~ 80200529 (+) True G550305
TU623571 other downstream 636910 80415447 ~ 80418272 (+) False myef2
TU623580 other downstream 636910 80415447 ~ 80425775 (+) False myef2
TU623584 other downstream 643005 80421542 ~ 80425775 (+) False myef2

Expression Profile