RNA id: TU622963


Basic Information

Item Value
RNA id TU622963
length 321
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G550222
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 79944720 ~ 79945040 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacagtgtagctatagcctacatgacattattatggacatagagccagatacagtgtagctatagcctacatgacattattatggacatagagccagatacagtgtagctatagcctacatgacattattatggacatagagccagatacagtgtagctatagcctacatgacattattatggacatagagccagatacagtgtaactatagcctacatgacattattatggacatagagccagatacagtgtagctatagcctacatgacattattatggacatagagccagatacagtgtagctatagtctaaatgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU622949 lncRNA upstream 62028 79881854 ~ 79882692 (+) True G550212
TU622931 lncRNA upstream 93355 79851166 ~ 79851365 (+) True G550195
TU622928 lncRNA upstream 104536 79839975 ~ 79840184 (+) True G550192
TU622906 lncRNA upstream 152648 79791837 ~ 79792072 (+) True G550171
TU622902 lncRNA upstream 166183 79778280 ~ 79778537 (+) True G550167
TU622964 lncRNA downstream 2721 79947761 ~ 79948588 (+) True G550223
TU623041 lncRNA downstream 139395 80084435 ~ 80084712 (+) True G550284
TU623043 lncRNA downstream 142798 80087838 ~ 80088156 (+) True G550286
TU623045 lncRNA downstream 145119 80090159 ~ 80090435 (+) True G550288
TU623033 lncRNA downstream 183884 80128924 ~ 80129152 (+) True G550276
XM_036981045.1 mRNA upstream 2589 79919963 ~ 79942131 (+) False LOC110506133
XM_036981046.1 mRNA upstream 2589 79919986 ~ 79942131 (+) True LOC110506133
XM_036981059.1 mRNA upstream 46369 79887514 ~ 79898351 (+) False LOC110514990
XM_036981060.1 mRNA upstream 46369 79887941 ~ 79898351 (+) False LOC110514990
XM_036981058.1 mRNA upstream 46369 79887967 ~ 79898351 (+) True LOC110514990
XM_036981785.1 mRNA downstream 9759 79954799 ~ 80064775 (+) True LOC118965045
XM_036981055.1 mRNA downstream 148433 80093473 ~ 80106535 (+) False LOC110506137
XM_036981057.1 mRNA downstream 148433 80093473 ~ 80106535 (+) False LOC110506137
XM_036981054.1 mRNA downstream 148455 80093495 ~ 80106535 (+) False LOC110506137
XM_036981056.1 mRNA downstream 148455 80093495 ~ 80106535 (+) True LOC110506137
TU622790 other upstream 366730 79571879 ~ 79577990 (+) False LOC118936661
TU622792 other upstream 366730 79571879 ~ 79577990 (+) False LOC118936661
TU622793 other upstream 366730 79571879 ~ 79577990 (+) True LOC118936661
TU622771 other upstream 464642 79479481 ~ 79480078 (+) True G550054
TU622349 other upstream 781689 79151364 ~ 79163031 (+) False LOC110526645
TU623015 other downstream 123708 80068748 ~ 80069285 (+) True G550265
TU623063 other downstream 255130 80200170 ~ 80200529 (+) True G550305
TU623571 other downstream 470407 80415447 ~ 80418272 (+) False myef2
TU623580 other downstream 470407 80415447 ~ 80425775 (+) False myef2
TU623584 other downstream 476502 80421542 ~ 80425775 (+) False myef2

Expression Profile