RNA id: TU622964


Basic Information

Item Value
RNA id TU622964
length 828
lncRNA type antisense_over
GC content 0.53
exon number 1
gene id G550223
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 79947761 ~ 79948588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCTTCGTCTCTCAGCGGTAGTTTtggcctctctctcctatctgcaGTCTCTGTATCTCCCAGCGGTAGTTTtggcctctctctcctatctgcagtctctgtgtctctcagcgGTAGTTTtggcctctctctcctatctgcaGTCTCTTAGTCTCTCAGCGGTAGTtttggcccctctctcctccctgcaggctCTGCGTCTCTCAGCGGTAGTTTtggcctctctctcctatctgcaGTCTCTTCGTCTCTCAGCGGTAGTTTtggcctctctctcctatctgcaGTCTCTGTATCTCCCAGCGGTAGTTTtggcctctctctcctatctgcagtctctgtgtctctcagcgGTAGTTTtggcctctctctcctatctgcaGTCTCTTCGTCTCTCAGCGGTAGTTTtggcctctctctcctatctgcaGTCTCTGTATCTCCCAGCGGTAGTTTtggcccctctctcctatctGCAGTCTCTGCGTCTCTCAGCGGTAGTTTtggcctctctctcctatctgcaGTCTCTTCGTCTCTCAGCGGTAGTTTTGGcccctctcctccctgcaggcTCTGCGTCTCTCAGCAGTAGTTttggcctctctctcctccctgcagccTCAGCGTCTCCCAGCGGTTGTCTTAGCCTTGTTGATCAGTGTGTGTAGGTAACAGTAGAAGTACATCAGGTTGTCGTACTGTCCTGTGTACTCCTGTCTCAGACACAGCTCCTGGTAGTCCTTGAGGAAGTAGTAGACAGCCTCTATGGTTGCCAGGTAGGTGTCTGGAGAACCTTTCTGATGGCGCCAGAAACACGTCTTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU622963 lncRNA upstream 2721 79944720 ~ 79945040 (+) True G550222
TU622949 lncRNA upstream 65069 79881854 ~ 79882692 (+) True G550212
TU622931 lncRNA upstream 96396 79851166 ~ 79851365 (+) True G550195
TU622928 lncRNA upstream 107577 79839975 ~ 79840184 (+) True G550192
TU622906 lncRNA upstream 155689 79791837 ~ 79792072 (+) True G550171
TU623041 lncRNA downstream 135847 80084435 ~ 80084712 (+) True G550284
TU623043 lncRNA downstream 139250 80087838 ~ 80088156 (+) True G550286
TU623045 lncRNA downstream 141571 80090159 ~ 80090435 (+) True G550288
TU623033 lncRNA downstream 180336 80128924 ~ 80129152 (+) True G550276
TU623030 lncRNA downstream 180669 80129257 ~ 80129918 (+) False LOC110506794
XM_036981045.1 mRNA upstream 5630 79919963 ~ 79942131 (+) False LOC110506133
XM_036981046.1 mRNA upstream 5630 79919986 ~ 79942131 (+) True LOC110506133
XM_036981059.1 mRNA upstream 49410 79887514 ~ 79898351 (+) False LOC110514990
XM_036981785.1 mRNA downstream 6211 79954799 ~ 80064775 (+) True LOC118965045
XM_036981055.1 mRNA downstream 144885 80093473 ~ 80106535 (+) False LOC110506137
XM_036981057.1 mRNA downstream 144885 80093473 ~ 80106535 (+) False LOC110506137
XM_036981054.1 mRNA downstream 144907 80093495 ~ 80106535 (+) False LOC110506137
XM_036981056.1 mRNA downstream 144907 80093495 ~ 80106535 (+) True LOC110506137
TU622790 other upstream 369771 79571879 ~ 79577990 (+) False LOC118936661
TU622792 other upstream 369771 79571879 ~ 79577990 (+) False LOC118936661
TU622793 other upstream 369771 79571879 ~ 79577990 (+) True LOC118936661
TU622771 other upstream 467683 79479481 ~ 79480078 (+) True G550054
TU622349 other upstream 784730 79151364 ~ 79163031 (+) False LOC110526645
TU623015 other downstream 120160 80068748 ~ 80069285 (+) True G550265
TU623063 other downstream 251582 80200170 ~ 80200529 (+) True G550305
TU623571 other downstream 466859 80415447 ~ 80418272 (+) False myef2
TU623580 other downstream 466859 80415447 ~ 80425775 (+) False myef2
TU623584 other downstream 472954 80421542 ~ 80425775 (+) False myef2

Expression Profile