RNA id: TU623041


Basic Information

Item Value
RNA id TU623041
length 278
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G550284
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 80084435 ~ 80084712 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccctttacactacaaacacactctacctgaccaacacacacccctttacactacaaacacacttcacctgaccaacacacacccctttacactacaaacacactctacctgaccaacacacacccctttacactacaaacactcttcacctgaccaacacacacccctttacactacaaacacattccacctgaccaacacacacccctttacactacaaacacactccacctgaccaacacacacccctttacactacaaacactcttcacctgac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU622964 lncRNA upstream 135847 79947761 ~ 79948588 (+) True G550223
TU622963 lncRNA upstream 139395 79944720 ~ 79945040 (+) True G550222
TU622949 lncRNA upstream 201743 79881854 ~ 79882692 (+) True G550212
TU622931 lncRNA upstream 233070 79851166 ~ 79851365 (+) True G550195
TU622928 lncRNA upstream 244251 79839975 ~ 79840184 (+) True G550192
TU623043 lncRNA downstream 3126 80087838 ~ 80088156 (+) True G550286
TU623045 lncRNA downstream 5447 80090159 ~ 80090435 (+) True G550288
TU623033 lncRNA downstream 44212 80128924 ~ 80129152 (+) True G550276
TU623030 lncRNA downstream 44545 80129257 ~ 80129918 (+) False LOC110506794
TU623053 lncRNA downstream 53418 80138130 ~ 80139660 (+) True G550296
XM_036981785.1 mRNA upstream 19660 79954799 ~ 80064775 (+) True LOC118965045
XM_036981045.1 mRNA upstream 142304 79919963 ~ 79942131 (+) False LOC110506133
XM_036981046.1 mRNA upstream 142304 79919986 ~ 79942131 (+) True LOC110506133
XM_036981059.1 mRNA upstream 186084 79887514 ~ 79898351 (+) False LOC110514990
XM_036981055.1 mRNA downstream 8761 80093473 ~ 80106535 (+) False LOC110506137
XM_036981057.1 mRNA downstream 8761 80093473 ~ 80106535 (+) False LOC110506137
XM_036981054.1 mRNA downstream 8783 80093495 ~ 80106535 (+) False LOC110506137
XM_036981056.1 mRNA downstream 8783 80093495 ~ 80106535 (+) True LOC110506137
XM_036981039.1 mRNA downstream 23843 80108555 ~ 80147068 (+) False LOC110506794
TU623015 other upstream 15150 80068748 ~ 80069285 (+) True G550265
TU622790 other upstream 506445 79571879 ~ 79577990 (+) False LOC118936661
TU622792 other upstream 506445 79571879 ~ 79577990 (+) False LOC118936661
TU622793 other upstream 506445 79571879 ~ 79577990 (+) True LOC118936661
TU622771 other upstream 604357 79479481 ~ 79480078 (+) True G550054
TU623063 other downstream 115458 80200170 ~ 80200529 (+) True G550305
TU623571 other downstream 330735 80415447 ~ 80418272 (+) False myef2
TU623580 other downstream 330735 80415447 ~ 80425775 (+) False myef2
TU623584 other downstream 336830 80421542 ~ 80425775 (+) False myef2
TU623583 other downstream 344735 80429447 ~ 80430929 (+) False myef2

Expression Profile