RNA id: TU623063


Basic Information

Item Value
RNA id TU623063
length 360
RNA type TUCP
GC content 0.48
exon number 1
gene id G550305
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 80200170 ~ 80200529 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgtcctagcagagtggtacagaatgcagacacattcatctatggtcgtcctagcagagtggtacagaatgcagacacattcatctatggtcgccctagcagagtggtacagaatgcagacacattcatctatggtcgtcctagcagagtggtacagaatgcagacacattcatctatggtcgtcctagcagagtggtacagaatgcagacacattcatctatggtcgccctagcagagtggtacagaatgcagacacattcatctatggtcgtcctagcagagtggtacagaatgcagacacattcatctatggtcggcctagcagagtggtacagaatgcagacacattcatctatggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU623061 lncRNA upstream 16157 80183740 ~ 80184013 (+) True G550303
TU623058 lncRNA upstream 29546 80167706 ~ 80170624 (+) False G550300
TU623057 lncRNA upstream 29546 80169266 ~ 80170624 (+) True G550300
TU623031 lncRNA upstream 33192 80166203 ~ 80166978 (+) True LOC110526764
TU623023 lncRNA upstream 53115 80144613 ~ 80147055 (+) False LOC110506794
TU623064 lncRNA downstream 2836 80203365 ~ 80203599 (+) True G550306
TU623088 lncRNA downstream 88862 80289391 ~ 80289783 (+) True G550329
TU623092 lncRNA downstream 97382 80297911 ~ 80298518 (+) True G550332
TU623032 lncRNA downstream 125087 80325616 ~ 80326357 (+) True LOC110506798
TU623034 lncRNA downstream 127583 80328112 ~ 80328531 (+) True G550277
XM_036981039.1 mRNA upstream 53102 80108555 ~ 80147068 (+) False LOC110506794
XM_036981037.1 mRNA upstream 53102 80108556 ~ 80147068 (+) False LOC110506794
XM_036981038.1 mRNA upstream 53102 80108556 ~ 80147068 (+) False LOC110506794
XM_036981040.1 mRNA upstream 53102 80108556 ~ 80147068 (+) False LOC110506794
XM_036981041.1 mRNA upstream 53102 80108556 ~ 80147068 (+) False LOC110506794
XR_002471038.2 mRNA downstream 124468 80324997 ~ 80326381 (+) False LOC110506798
XM_036981073.1 mRNA downstream 214885 80415414 ~ 80430972 (+) False myef2
XM_036981074.1 mRNA downstream 214885 80415414 ~ 80430972 (+) False myef2
XM_036981076.1 mRNA downstream 277290 80477819 ~ 80479832 (+) True LOC110516752
XM_036981104.1 mRNA downstream 939694 81140223 ~ 81152829 (+) False LOC110506811
TU623015 other upstream 130885 80068748 ~ 80069285 (+) True G550265
TU622790 other upstream 622180 79571879 ~ 79577990 (+) False LOC118936661
TU622792 other upstream 622180 79571879 ~ 79577990 (+) False LOC118936661
TU622793 other upstream 622180 79571879 ~ 79577990 (+) True LOC118936661
TU622771 other upstream 720092 79479481 ~ 79480078 (+) True G550054
TU623571 other downstream 214918 80415447 ~ 80418272 (+) False myef2
TU623580 other downstream 214918 80415447 ~ 80425775 (+) False myef2
TU623584 other downstream 221013 80421542 ~ 80425775 (+) False myef2
TU623583 other downstream 228918 80429447 ~ 80430929 (+) False myef2
TU623987 other downstream 720178 80920707 ~ 80921436 (+) True G551043

Expression Profile