RNA id: TU623092


Basic Information

Item Value
RNA id TU623092
length 370
lncRNA type intronic
GC content 0.42
exon number 2
gene id G550332
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 80297911 ~ 80298518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agatatctactataggcctgtagggactggaatctgctatagatatctactatagggactggaatctgctatagatatctactataggcctgtagggactggaatctgctatagatatctactataggcctgtagggactggaatctgctatagatatctactataggcctgtagggactggaatctgctatagatatctactataggcctgtagggactggaatctgctctagatatctactataggtctgtagggactggaatctgctatagatatctactataggcctgtagggactggaatctgctatagatatcttactataggcctgtagggactggaatctgctctagatatctactataggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU623088 lncRNA upstream 8128 80289391 ~ 80289783 (+) True G550329
TU623064 lncRNA upstream 94312 80203365 ~ 80203599 (+) True G550306
TU623061 lncRNA upstream 113898 80183740 ~ 80184013 (+) True G550303
TU623058 lncRNA upstream 127287 80167706 ~ 80170624 (+) False G550300
TU623057 lncRNA upstream 127287 80169266 ~ 80170624 (+) True G550300
TU623032 lncRNA downstream 27098 80325616 ~ 80326357 (+) True LOC110506798
TU623034 lncRNA downstream 29594 80328112 ~ 80328531 (+) True G550277
TU623096 lncRNA downstream 34243 80332761 ~ 80332974 (+) True G550335
TU623108 lncRNA downstream 65887 80364405 ~ 80365182 (+) True G550346
TU623113 lncRNA downstream 73758 80372276 ~ 80373216 (+) True G550351
XM_036981040.1 mRNA upstream 150843 80108556 ~ 80147068 (+) False LOC110506794
XR_002471038.2 mRNA downstream 26479 80324997 ~ 80326381 (+) False LOC110506798
XM_036981073.1 mRNA downstream 116896 80415414 ~ 80430972 (+) False myef2
XM_036981074.1 mRNA downstream 116896 80415414 ~ 80430972 (+) False myef2
XM_036981076.1 mRNA downstream 179301 80477819 ~ 80479832 (+) True LOC110516752
XM_036981104.1 mRNA downstream 841705 81140223 ~ 81152829 (+) False LOC110506811
TU623063 other upstream 97382 80200170 ~ 80200529 (+) True G550305
TU623015 other upstream 228626 80068748 ~ 80069285 (+) True G550265
TU622790 other upstream 719921 79571879 ~ 79577990 (+) False LOC118936661
TU623571 other downstream 116929 80415447 ~ 80418272 (+) False myef2
TU623580 other downstream 116929 80415447 ~ 80425775 (+) False myef2
TU623584 other downstream 123024 80421542 ~ 80425775 (+) False myef2
TU623583 other downstream 130929 80429447 ~ 80430929 (+) False myef2
TU623987 other downstream 622189 80920707 ~ 80921436 (+) True G551043

Expression Profile