RNA id: TU623644


Basic Information

Item Value
RNA id TU623644
length 335
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G550754
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 80586414 ~ 80586771 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaaaaaaagccgattaatcggtatcggcttttttggtcctccaataatcggtatcggtgttggcgttgaaaaatcataatcggtcgacctgtagtgtttatgtgatgttgtctgtagtgtttatgtgatgttgtctgtagtgtttatgtgatgttgtctgtagtgtttatgtgatgttgtctgtagcgttcatgtgatgttgtctgtagcgttcatgtgatgttgtctgtagtgttcatgtgatgttgtctgtagtgttcatgtgatgttgtctgtagcgttcatgtgatgttgtctgtagcGGTGACTGAGAGGAGAATGACCTCCAGATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU623624 lncRNA upstream 59701 80518505 ~ 80526713 (+) True G550734
TU623618 lncRNA upstream 88695 80497057 ~ 80497719 (+) True G550729
TU623614 lncRNA upstream 99828 80483965 ~ 80486586 (+) True G550726
TU623595 lncRNA upstream 136860 80438492 ~ 80449554 (+) True G550712
TU623601 lncRNA upstream 143012 80442617 ~ 80443402 (+) True G550715
TU623651 lncRNA downstream 1612 80588383 ~ 80591331 (+) True G550758
TU623781 lncRNA downstream 63363 80650134 ~ 80650493 (+) True G550868
TU623796 lncRNA downstream 88227 80674998 ~ 80683447 (+) True G550878
TU623801 lncRNA downstream 101742 80688513 ~ 80688808 (+) True G550883
TU623823 lncRNA downstream 107877 80694648 ~ 80695197 (+) True G550902
XM_036981076.1 mRNA upstream 106582 80477819 ~ 80479832 (+) True LOC110516752
XM_036981073.1 mRNA upstream 155442 80415414 ~ 80430972 (+) False myef2
XM_036981074.1 mRNA upstream 155442 80415414 ~ 80430972 (+) False myef2
XR_002471038.2 mRNA upstream 260033 80324997 ~ 80326381 (+) False LOC110506798
XM_036981026.1 mRNA upstream 268879 80166186 ~ 80317535 (+) False LOC110526764
XM_036981104.1 mRNA downstream 553452 81140223 ~ 81152829 (+) False LOC110506811
XR_005052253.1 mRNA downstream 553452 81140223 ~ 81152829 (+) False LOC110506811
XM_036981108.1 mRNA downstream 682273 81269044 ~ 81284987 (+) True LOC110506818
XM_036981119.1 mRNA downstream 715992 81302763 ~ 81350307 (+) False LOC110526110
XM_036981109.1 mRNA downstream 848323 81435094 ~ 81466198 (+) False LOC110526107
TU623583 other upstream 155485 80429447 ~ 80430929 (+) False myef2
TU623580 other upstream 160639 80415447 ~ 80425775 (+) False myef2
TU623584 other upstream 160639 80421542 ~ 80425775 (+) False myef2
TU623571 other upstream 168142 80415447 ~ 80418272 (+) False myef2
TU623063 other upstream 385885 80200170 ~ 80200529 (+) True G550305
TU623987 other downstream 333936 80920707 ~ 80921436 (+) True G551043
TU624220 other downstream 866725 81453496 ~ 81466198 (+) True LOC110526107
TU624716 other downstream 1258146 81844917 ~ 81849590 (+) False LOC110506150
TU624715 other downstream 1262897 81849668 ~ 81856191 (+) False LOC110506150
TU624714 other downstream 1270130 81856901 ~ 81860258 (+) True LOC110506150

Expression Profile