RNA id: TU623860


Basic Information

Item Value
RNA id TU623860
length 223
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G550939
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 80738851 ~ 80739073 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctgaatggagggaggtatggttgtctgactgaatggagggaggtatggttgtctgactgaatggagggaggtatggttgtctgactgaatgaagggaggtatggttgtctgactgaatggagggaggtagggttgtctgactgaatgaagggaggtatggttgtctgactgaatggagggaggtatggttgtctgactgaatggagggaggtatggttatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU623846 lncRNA upstream 11518 80727132 ~ 80727333 (+) True G550925
TU623831 lncRNA upstream 29260 80709352 ~ 80709591 (+) True G550910
TU623823 lncRNA upstream 43654 80694648 ~ 80695197 (+) True G550902
TU623801 lncRNA upstream 50043 80688513 ~ 80688808 (+) True G550883
TU623796 lncRNA upstream 55404 80674998 ~ 80683447 (+) True G550878
TU623862 lncRNA downstream 6711 80745784 ~ 80746004 (+) True G550941
TU623911 lncRNA downstream 66015 80805088 ~ 80805309 (+) True G550978
TU623914 lncRNA downstream 70835 80809908 ~ 80810245 (+) True G550981
TU623915 lncRNA downstream 72555 80811628 ~ 80811930 (+) True G550982
TU623921 lncRNA downstream 75220 80814293 ~ 80814507 (+) True G550988
XM_036981076.1 mRNA upstream 259019 80477819 ~ 80479832 (+) True LOC110516752
XM_036981073.1 mRNA upstream 307879 80415414 ~ 80430972 (+) False myef2
XM_036981074.1 mRNA upstream 307879 80415414 ~ 80430972 (+) False myef2
XR_002471038.2 mRNA upstream 412470 80324997 ~ 80326381 (+) False LOC110506798
XM_036981026.1 mRNA upstream 421316 80166186 ~ 80317535 (+) False LOC110526764
XM_036981104.1 mRNA downstream 401150 81140223 ~ 81152829 (+) False LOC110506811
XR_005052253.1 mRNA downstream 401150 81140223 ~ 81152829 (+) False LOC110506811
XM_036981108.1 mRNA downstream 529971 81269044 ~ 81284987 (+) True LOC110506818
XM_036981119.1 mRNA downstream 563690 81302763 ~ 81350307 (+) False LOC110526110
XM_036981109.1 mRNA downstream 696021 81435094 ~ 81466198 (+) False LOC110526107
TU623583 other upstream 307922 80429447 ~ 80430929 (+) False myef2
TU623580 other upstream 313076 80415447 ~ 80425775 (+) False myef2
TU623584 other upstream 313076 80421542 ~ 80425775 (+) False myef2
TU623571 other upstream 320579 80415447 ~ 80418272 (+) False myef2
TU623063 other upstream 538322 80200170 ~ 80200529 (+) True G550305
TU623987 other downstream 181634 80920707 ~ 80921436 (+) True G551043
TU624220 other downstream 714423 81453496 ~ 81466198 (+) True LOC110526107
TU624716 other downstream 1105844 81844917 ~ 81849590 (+) False LOC110506150
TU624715 other downstream 1110595 81849668 ~ 81856191 (+) False LOC110506150
TU624714 other downstream 1117828 81856901 ~ 81860258 (+) True LOC110506150

Expression Profile