RNA id: TU623930


Basic Information

Item Value
RNA id TU623930
length 206
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G550992
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 80817649 ~ 80817854 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACACATGtactaacacaacacacacagcctgttctaacccaatacatacacatgtactaacacaccacacacagcctgttctaacccaatacctacagtatatgtactaacacaccacacacagcctgttctaaCTCAATACCTACACATGtactaacacaacacacacagcctgttctaacccaatacatacacatgtactaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU623925 lncRNA upstream 912 80816048 ~ 80816737 (+) True G550990
TU623921 lncRNA upstream 3142 80814293 ~ 80814507 (+) True G550988
TU623915 lncRNA upstream 5719 80811628 ~ 80811930 (+) True G550982
TU623914 lncRNA upstream 7404 80809908 ~ 80810245 (+) True G550981
TU623911 lncRNA upstream 12340 80805088 ~ 80805309 (+) True G550978
TU623972 lncRNA downstream 57216 80875070 ~ 80875276 (+) True G551028
TU623974 lncRNA downstream 58134 80875988 ~ 80876654 (+) True G551030
TU623976 lncRNA downstream 76723 80894577 ~ 80894778 (+) True G551032
TU623986 lncRNA downstream 101878 80919732 ~ 80920023 (+) True G551042
TU623995 lncRNA downstream 111198 80929052 ~ 80929468 (+) True G551050
XM_036981076.1 mRNA upstream 337817 80477819 ~ 80479832 (+) True LOC110516752
XM_036981073.1 mRNA upstream 386677 80415414 ~ 80430972 (+) False myef2
XM_036981074.1 mRNA upstream 386677 80415414 ~ 80430972 (+) False myef2
XR_002471038.2 mRNA upstream 491268 80324997 ~ 80326381 (+) False LOC110506798
XM_036981026.1 mRNA upstream 500114 80166186 ~ 80317535 (+) False LOC110526764
XM_036981104.1 mRNA downstream 322369 81140223 ~ 81152829 (+) False LOC110506811
XR_005052253.1 mRNA downstream 322369 81140223 ~ 81152829 (+) False LOC110506811
XM_036981108.1 mRNA downstream 451190 81269044 ~ 81284987 (+) True LOC110506818
XM_036981119.1 mRNA downstream 484909 81302763 ~ 81350307 (+) False LOC110526110
XM_036981109.1 mRNA downstream 617240 81435094 ~ 81466198 (+) False LOC110526107
TU623583 other upstream 386720 80429447 ~ 80430929 (+) False myef2
TU623580 other upstream 391874 80415447 ~ 80425775 (+) False myef2
TU623584 other upstream 391874 80421542 ~ 80425775 (+) False myef2
TU623571 other upstream 399377 80415447 ~ 80418272 (+) False myef2
TU623063 other upstream 617120 80200170 ~ 80200529 (+) True G550305
TU623987 other downstream 102853 80920707 ~ 80921436 (+) True G551043
TU624220 other downstream 635642 81453496 ~ 81466198 (+) True LOC110526107
TU624716 other downstream 1027063 81844917 ~ 81849590 (+) False LOC110506150
TU624715 other downstream 1031814 81849668 ~ 81856191 (+) False LOC110506150
TU624714 other downstream 1039047 81856901 ~ 81860258 (+) True LOC110506150

Expression Profile