RNA id: TU624005


Basic Information

Item Value
RNA id TU624005
length 299
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G551060
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 80936357 ~ 80936655 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccagacccagccttatccagacccagccttatccagacccagtcttacccagccttacccagacccagccttatccagacccagccttatccagacccagttttacccagccttacccagacccagccttatccagacccagccttatccagacccagtcttacccagccttacccagacccagccttatccagacccagccttatccagacccagtcttacccagccttacccagacccagccttatccagacccagccttacccagacccagtcttacccagccttatccagaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU623995 lncRNA upstream 6889 80929052 ~ 80929468 (+) True G551050
TU623986 lncRNA upstream 16334 80919732 ~ 80920023 (+) True G551042
TU623976 lncRNA upstream 41579 80894577 ~ 80894778 (+) True G551032
TU623974 lncRNA upstream 59703 80875988 ~ 80876654 (+) True G551030
TU623972 lncRNA upstream 61081 80875070 ~ 80875276 (+) True G551028
TU624018 lncRNA downstream 27165 80963820 ~ 80964364 (+) True G551073
TU624020 lncRNA downstream 28596 80965251 ~ 80965465 (+) True G551075
TU624021 lncRNA downstream 29000 80965655 ~ 80965862 (+) True G551076
TU624034 lncRNA downstream 53165 80989820 ~ 80990043 (+) True G551089
TU624040 lncRNA downstream 58775 80995430 ~ 80995676 (+) True G551095
XM_036981076.1 mRNA upstream 456525 80477819 ~ 80479832 (+) True LOC110516752
XM_036981073.1 mRNA upstream 505385 80415414 ~ 80430972 (+) False myef2
XM_036981074.1 mRNA upstream 505385 80415414 ~ 80430972 (+) False myef2
XR_002471038.2 mRNA upstream 609976 80324997 ~ 80326381 (+) False LOC110506798
XM_036981026.1 mRNA upstream 618822 80166186 ~ 80317535 (+) False LOC110526764
XM_036981104.1 mRNA downstream 203568 81140223 ~ 81152829 (+) False LOC110506811
XR_005052253.1 mRNA downstream 203568 81140223 ~ 81152829 (+) False LOC110506811
XM_036981108.1 mRNA downstream 332389 81269044 ~ 81284987 (+) True LOC110506818
XM_036981119.1 mRNA downstream 366108 81302763 ~ 81350307 (+) False LOC110526110
XM_036981109.1 mRNA downstream 498439 81435094 ~ 81466198 (+) False LOC110526107
TU623987 other upstream 14921 80920707 ~ 80921436 (+) True G551043
TU623583 other upstream 505428 80429447 ~ 80430929 (+) False myef2
TU623580 other upstream 510582 80415447 ~ 80425775 (+) False myef2
TU623584 other upstream 510582 80421542 ~ 80425775 (+) False myef2
TU623571 other upstream 518085 80415447 ~ 80418272 (+) False myef2
TU624220 other downstream 516841 81453496 ~ 81466198 (+) True LOC110526107
TU624716 other downstream 908262 81844917 ~ 81849590 (+) False LOC110506150
TU624715 other downstream 913013 81849668 ~ 81856191 (+) False LOC110506150
TU624714 other downstream 920246 81856901 ~ 81860258 (+) True LOC110506150
TU624849 other downstream 1085396 82022051 ~ 82060415 (+) False LOC118964938

Expression Profile