RNA id: TU624127


Basic Information

Item Value
RNA id TU624127
length 214
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G551174
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 81116983 ~ 81117196 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACAcgttgtcatgactctcctgtgaggaGCCAAAGACCAGGTTACAATGGATCAACGTCTACCAGATCCCTTTCACccacagaggggaggagggattgatgtgggggttttatgacaccTCACACCCAGTCGTACATTTTATGCAGCAGAGAACTATGTTTGGTCTTCAGTAGTGGTGATTGGAATCTCTTTGTTACAGAAACGTTTTGCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU624107 lncRNA upstream 15492 81101198 ~ 81101491 (+) True G551156
TU624091 lncRNA upstream 31890 81084769 ~ 81085093 (+) True G551145
TU624089 lncRNA upstream 42791 81073471 ~ 81074192 (+) True G551143
TU624087 lncRNA upstream 47700 81069070 ~ 81069283 (+) True G551141
TU624076 lncRNA upstream 61599 81055130 ~ 81055384 (+) True G551131
TU624128 lncRNA downstream 704 81117900 ~ 81118908 (+) True G551175
TU624134 lncRNA downstream 7281 81124477 ~ 81125151 (+) True G551181
TU624148 lncRNA downstream 35214 81152410 ~ 81154890 (+) True LOC110506811
TU624165 lncRNA downstream 62712 81179908 ~ 81183384 (+) True G551206
TU624190 lncRNA downstream 98370 81215566 ~ 81215921 (+) True G551224
XM_036981076.1 mRNA upstream 637151 80477819 ~ 80479832 (+) True LOC110516752
XM_036981073.1 mRNA upstream 686011 80415414 ~ 80430972 (+) False myef2
XM_036981074.1 mRNA upstream 686011 80415414 ~ 80430972 (+) False myef2
XR_002471038.2 mRNA upstream 790602 80324997 ~ 80326381 (+) False LOC110506798
XM_036981026.1 mRNA upstream 799448 80166186 ~ 80317535 (+) False LOC110526764
XM_036981104.1 mRNA downstream 23027 81140223 ~ 81152829 (+) False LOC110506811
XR_005052253.1 mRNA downstream 23027 81140223 ~ 81152829 (+) False LOC110506811
XM_036981108.1 mRNA downstream 151848 81269044 ~ 81284987 (+) True LOC110506818
XM_036981119.1 mRNA downstream 185567 81302763 ~ 81350307 (+) False LOC110526110
XM_036981109.1 mRNA downstream 317898 81435094 ~ 81466198 (+) False LOC110526107
TU623987 other upstream 195547 80920707 ~ 80921436 (+) True G551043
TU623583 other upstream 686054 80429447 ~ 80430929 (+) False myef2
TU623580 other upstream 691208 80415447 ~ 80425775 (+) False myef2
TU623584 other upstream 691208 80421542 ~ 80425775 (+) False myef2
TU623571 other upstream 698711 80415447 ~ 80418272 (+) False myef2
TU624220 other downstream 336300 81453496 ~ 81466198 (+) True LOC110526107
TU624716 other downstream 727721 81844917 ~ 81849590 (+) False LOC110506150
TU624715 other downstream 732472 81849668 ~ 81856191 (+) False LOC110506150
TU624714 other downstream 739705 81856901 ~ 81860258 (+) True LOC110506150
TU624849 other downstream 904855 82022051 ~ 82060415 (+) False LOC118964938

Expression Profile