RNA id: TU624134


Basic Information

Item Value
RNA id TU624134
length 315
lncRNA type intronic
GC content 0.37
exon number 3
gene id G551181
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 81124477 ~ 81125151 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTCTTTATTTGTATAGTCCAGATatatgctctacagatggtcatactatcaacaaacaaATCTGTTGATAAGAAACTGTTAGTttacggttaaggttaggtttagaaaaAGGcttagattagggttagggttaagtttagggttaggataagggttaaggttaggactagggttaagtttagggttaggataagggttaaggttaggactagggttaagtttagggttaggataagggttaaggttaggactagggttaaggttaagtttagggttaggataagggttaaggttaggactagggttagggtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU624128 lncRNA upstream 5569 81117900 ~ 81118908 (+) True G551175
TU624127 lncRNA upstream 7281 81116983 ~ 81117196 (+) True G551174
TU624107 lncRNA upstream 22986 81101198 ~ 81101491 (+) True G551156
TU624091 lncRNA upstream 39384 81084769 ~ 81085093 (+) True G551145
TU624089 lncRNA upstream 50285 81073471 ~ 81074192 (+) True G551143
TU624148 lncRNA downstream 27259 81152410 ~ 81154890 (+) True LOC110506811
TU624165 lncRNA downstream 54757 81179908 ~ 81183384 (+) True G551206
TU624190 lncRNA downstream 90415 81215566 ~ 81215921 (+) True G551224
TU624191 lncRNA downstream 91171 81216322 ~ 81216630 (+) True G551225
TU624192 lncRNA downstream 91820 81216971 ~ 81217174 (+) True G551226
XM_036981076.1 mRNA upstream 644645 80477819 ~ 80479832 (+) True LOC110516752
XM_036981073.1 mRNA upstream 693505 80415414 ~ 80430972 (+) False myef2
XM_036981074.1 mRNA upstream 693505 80415414 ~ 80430972 (+) False myef2
XR_002471038.2 mRNA upstream 798096 80324997 ~ 80326381 (+) False LOC110506798
XM_036981026.1 mRNA upstream 806942 80166186 ~ 80317535 (+) False LOC110526764
XM_036981104.1 mRNA downstream 15072 81140223 ~ 81152829 (+) False LOC110506811
XR_005052253.1 mRNA downstream 15072 81140223 ~ 81152829 (+) False LOC110506811
XM_036981108.1 mRNA downstream 143893 81269044 ~ 81284987 (+) True LOC110506818
XM_036981119.1 mRNA downstream 177612 81302763 ~ 81350307 (+) False LOC110526110
XM_036981109.1 mRNA downstream 309943 81435094 ~ 81466198 (+) False LOC110526107
TU623987 other upstream 203041 80920707 ~ 80921436 (+) True G551043
TU623583 other upstream 693548 80429447 ~ 80430929 (+) False myef2
TU623580 other upstream 698702 80415447 ~ 80425775 (+) False myef2
TU623584 other upstream 698702 80421542 ~ 80425775 (+) False myef2
TU623571 other upstream 706205 80415447 ~ 80418272 (+) False myef2
TU624220 other downstream 328345 81453496 ~ 81466198 (+) True LOC110526107
TU624716 other downstream 719766 81844917 ~ 81849590 (+) False LOC110506150
TU624715 other downstream 724517 81849668 ~ 81856191 (+) False LOC110506150
TU624714 other downstream 731750 81856901 ~ 81860258 (+) True LOC110506150
TU624849 other downstream 896900 82022051 ~ 82060415 (+) False LOC118964938

Expression Profile