RNA id: TU624197


Basic Information

Item Value
RNA id TU624197
length 471
lncRNA type antisense_over
GC content 0.54
exon number 1
gene id G551229
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 81220535 ~ 81221021 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACTGatctcctcctgtcttcctcgCCCCCTCTACCTCGGACACCTTGCCTCCCTtcgccccctcctctcctcccttataGGAGGTGTCCAGGTCAGCAGAGAGCAGAgcgtagaggggtagagggggtatGGAGTTGATTTCTGTGTAATCTCGTCCCCCGTCGCGGCCGGCCACGATGGTGTCTTTAGCCGTACTGCCGCTCACACTGATTGTCCGGGACAGGTGGCGTCTGGTTCCACCCTCACCTGCCTCCACGTCCCTCACCACAGCAACCTCCCCAGCGATACATTTCACCAGGTGGGACAGGATGGCCTGAAGAAGAAGAATAACCATCTTCCTCATCCGTGGCAGAGACATTAATATAGTCATTGACGGCATCCTCgccatcatcattgtcatcaTAATTACAGTAGTCATGTTgttgtcatcatcatcatgacaTTCTATGACTACTCAAGAAGTTGTCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU624194 lncRNA upstream 329 81220013 ~ 81220222 (+) True G551228
TU624193 lncRNA upstream 2393 81217861 ~ 81218158 (+) True G551227
TU624192 lncRNA upstream 3377 81216971 ~ 81217174 (+) True G551226
TU624191 lncRNA upstream 3921 81216322 ~ 81216630 (+) True G551225
TU624190 lncRNA upstream 4630 81215566 ~ 81215921 (+) True G551224
TU624246 lncRNA downstream 81847 81302868 ~ 81336525 (+) True LOC110526110
TU624291 lncRNA downstream 104769 81325790 ~ 81328151 (+) True G551294
TU624294 lncRNA downstream 105113 81326134 ~ 81334349 (+) True G551296
TU624308 lncRNA downstream 146804 81367825 ~ 81368163 (+) True G551305
TU624309 lncRNA downstream 148385 81369406 ~ 81369698 (+) True G551306
XM_036981104.1 mRNA upstream 67722 81140223 ~ 81152829 (+) False LOC110506811
XR_005052253.1 mRNA upstream 67722 81140223 ~ 81152829 (+) False LOC110506811
XM_036981076.1 mRNA upstream 740719 80477819 ~ 80479832 (+) True LOC110516752
XM_036981073.1 mRNA upstream 789579 80415414 ~ 80430972 (+) False myef2
XM_036981108.1 mRNA downstream 48023 81269044 ~ 81284987 (+) True LOC110506818
XM_036981119.1 mRNA downstream 81742 81302763 ~ 81350307 (+) False LOC110526110
XM_036981109.1 mRNA downstream 214073 81435094 ~ 81466198 (+) False LOC110526107
XM_036981110.1 mRNA downstream 214073 81435094 ~ 81466198 (+) False LOC110526107
XM_036981111.1 mRNA downstream 303786 81524807 ~ 81547341 (+) False LOC110506821
TU623987 other upstream 299115 80920707 ~ 80921436 (+) True G551043
TU623583 other upstream 789622 80429447 ~ 80430929 (+) False myef2
TU623580 other upstream 794776 80415447 ~ 80425775 (+) False myef2
TU623584 other upstream 794776 80421542 ~ 80425775 (+) False myef2
TU623571 other upstream 802279 80415447 ~ 80418272 (+) False myef2
TU624220 other downstream 232475 81453496 ~ 81466198 (+) True LOC110526107
TU624716 other downstream 623896 81844917 ~ 81849590 (+) False LOC110506150
TU624715 other downstream 628647 81849668 ~ 81856191 (+) False LOC110506150
TU624714 other downstream 635880 81856901 ~ 81860258 (+) True LOC110506150
TU624849 other downstream 801030 82022051 ~ 82060415 (+) False LOC118964938

Expression Profile