RNA id: TU624291


Basic Information

Item Value
RNA id TU624291
length 285
lncRNA type intronic
GC content 0.40
exon number 2
gene id G551294
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 81325790 ~ 81328151 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttaaactctttacagcaggtacagtagtaaaactccttagagcaggtacagtagtaaaactctttacagcaggtacagtagtataactccttacagcaggtacagtagtataactccttacagcaggtacagtagtaaaactctagagcaggtacagtagtaaaactccttacagcaggtacagtagtataactccttacagcaggtacagtagtaaaactccttacagcaggtacagtagtaaaactccttacagcaggtacagtagtaaaactccttagagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU624198 lncRNA upstream 104769 81220535 ~ 81221021 (+) False G551229
TU624197 lncRNA upstream 104769 81220551 ~ 81221021 (+) True G551229
TU624196 lncRNA upstream 104927 81220535 ~ 81220863 (+) False G551229
TU624195 lncRNA upstream 104927 81220551 ~ 81220863 (+) False G551229
TU624194 lncRNA upstream 105568 81220013 ~ 81220222 (+) True G551228
TU624308 lncRNA downstream 39674 81367825 ~ 81368163 (+) True G551305
TU624309 lncRNA downstream 41255 81369406 ~ 81369698 (+) True G551306
TU624310 lncRNA downstream 43472 81371623 ~ 81371945 (+) True G551307
TU624314 lncRNA downstream 63496 81391647 ~ 81392021 (+) True G551311
TU624333 lncRNA downstream 101070 81429221 ~ 81434177 (+) True G551326
XM_036981108.1 mRNA upstream 40803 81269044 ~ 81284987 (+) True LOC110506818
XM_036981104.1 mRNA upstream 172961 81140223 ~ 81152829 (+) False LOC110506811
XR_005052253.1 mRNA upstream 172961 81140223 ~ 81152829 (+) False LOC110506811
XM_036981076.1 mRNA upstream 845958 80477819 ~ 80479832 (+) True LOC110516752
XM_036981074.1 mRNA upstream 894818 80415414 ~ 80430972 (+) False myef2
XM_036981109.1 mRNA downstream 106943 81435094 ~ 81466198 (+) False LOC110526107
XM_036981110.1 mRNA downstream 106943 81435094 ~ 81466198 (+) False LOC110526107
XM_036981111.1 mRNA downstream 196656 81524807 ~ 81547341 (+) False LOC110506821
XM_036981112.1 mRNA downstream 196656 81524807 ~ 81547341 (+) True LOC110506821
XM_036981106.1 mRNA downstream 223035 81551186 ~ 81568248 (+) False LOC110506823
TU623987 other upstream 404354 80920707 ~ 80921436 (+) True G551043
TU623583 other upstream 894861 80429447 ~ 80430929 (+) False myef2
TU623580 other upstream 900015 80415447 ~ 80425775 (+) False myef2
TU623584 other upstream 900015 80421542 ~ 80425775 (+) False myef2
TU623571 other upstream 907518 80415447 ~ 80418272 (+) False myef2
TU624220 other downstream 125345 81453496 ~ 81466198 (+) True LOC110526107
TU624716 other downstream 516766 81844917 ~ 81849590 (+) False LOC110506150
TU624715 other downstream 521517 81849668 ~ 81856191 (+) False LOC110506150
TU624714 other downstream 528750 81856901 ~ 81860258 (+) True LOC110506150
TU624849 other downstream 693900 82022051 ~ 82060415 (+) False LOC118964938

Expression Profile