RNA id: TU624314


Basic Information

Item Value
RNA id TU624314
length 375
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G551311
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 81391647 ~ 81392021 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGATATTTAAtttcattgttatttgtttttgtctatgttgcatttgttttaggcaataagggcaatgaaatgtacTTGAcgcgacttccgccaaagtcagGTCcactccttgttcgggcggcgtcggcggtcttctagccatcatcgatccacttttcattttccatgtgttttttctcGTTTTttctcacacctggtttcaattccctcaatcacttgttgtgtatttaaccctcgtttccccccatgtctctgtgtggtattgtttattgtaagtgcttgtgcacgtgtTGATTGGTACGCAACAGGTTTTTGTACCCATACCTTGTTATTTTCATGCTGTTGGTTTTGCTATTAAACTGCTCAGGCTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU624310 lncRNA upstream 19702 81371623 ~ 81371945 (+) True G551307
TU624309 lncRNA upstream 21949 81369406 ~ 81369698 (+) True G551306
TU624308 lncRNA upstream 23484 81367825 ~ 81368163 (+) True G551305
TU624246 lncRNA upstream 55122 81302868 ~ 81336525 (+) True LOC110526110
TU624333 lncRNA downstream 37200 81429221 ~ 81434177 (+) True G551326
TU624341 lncRNA downstream 78860 81470881 ~ 81472859 (+) False G551333
TU624342 lncRNA downstream 79938 81471959 ~ 81472859 (+) True G551333
TU624343 lncRNA downstream 81123 81473144 ~ 81474264 (+) True G551334
TU624348 lncRNA downstream 89087 81481108 ~ 81481342 (+) True G551339
XM_036981119.1 mRNA upstream 41340 81302763 ~ 81350307 (+) False LOC110526110
XM_036981108.1 mRNA upstream 106660 81269044 ~ 81284987 (+) True LOC110506818
XM_036981104.1 mRNA upstream 238818 81140223 ~ 81152829 (+) False LOC110506811
XR_005052253.1 mRNA upstream 238818 81140223 ~ 81152829 (+) False LOC110506811
XM_036981076.1 mRNA upstream 911815 80477819 ~ 80479832 (+) True LOC110516752
XM_036981109.1 mRNA downstream 43073 81435094 ~ 81466198 (+) False LOC110526107
XM_036981110.1 mRNA downstream 43073 81435094 ~ 81466198 (+) False LOC110526107
XM_036981111.1 mRNA downstream 132786 81524807 ~ 81547341 (+) False LOC110506821
XM_036981112.1 mRNA downstream 132786 81524807 ~ 81547341 (+) True LOC110506821
XM_036981106.1 mRNA downstream 159165 81551186 ~ 81568248 (+) False LOC110506823
TU623987 other upstream 470211 80920707 ~ 80921436 (+) True G551043
TU623583 other upstream 960718 80429447 ~ 80430929 (+) False myef2
TU623580 other upstream 965872 80415447 ~ 80425775 (+) False myef2
TU623584 other upstream 965872 80421542 ~ 80425775 (+) False myef2
TU623571 other upstream 973375 80415447 ~ 80418272 (+) False myef2
TU624220 other downstream 61475 81453496 ~ 81466198 (+) True LOC110526107
TU624716 other downstream 452896 81844917 ~ 81849590 (+) False LOC110506150
TU624715 other downstream 457647 81849668 ~ 81856191 (+) False LOC110506150
TU624714 other downstream 464880 81856901 ~ 81860258 (+) True LOC110506150
TU624849 other downstream 630030 82022051 ~ 82060415 (+) False LOC118964938

Expression Profile