RNA id: TU624896


Basic Information

Item Value
RNA id TU624896
length 259
lncRNA type intronic
GC content 0.54
exon number 2
gene id G551770
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 82154628 ~ 82155340 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtggctgaaccctggtggtgctgtgggagagagagttaatgatgatggtgggaggtggctgaaccctggtgctgctgtgggagagagagttaatgaggaTGGTTGGAGGTGGCTGGACCCTGGTGGTGCTGTGGGAGAGATAATTAATGATAATGAGAGGTGGCTGAACCCTGGtggtgctgtgggagagagagttaatgatAGTGAGAGGTGGCTGAACCCTGGTGGTGCTGTGGGAGAGGGAGTTAATGATGGTGGG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU624876 lncRNA upstream 38888 82115392 ~ 82115740 (+) True G551752
TU624843 lncRNA upstream 40272 82112035 ~ 82114356 (+) True G551721
TU624802 lncRNA upstream 245896 81908493 ~ 81908732 (+) True G551684
TU624801 lncRNA upstream 248399 81905634 ~ 81906229 (+) True G551683
TU624794 lncRNA upstream 274486 81878909 ~ 81880142 (+) True G551678
TU624930 lncRNA downstream 108807 82263795 ~ 82264106 (+) True G551804
TU624975 lncRNA downstream 229929 82384917 ~ 82385727 (+) True G551848
TU624978 lncRNA downstream 234460 82389448 ~ 82391425 (+) True G551851
TU624994 lncRNA downstream 265977 82420965 ~ 82421244 (+) True G551863
TU624995 lncRNA downstream 266369 82421357 ~ 82421616 (+) True G551864
trnaa-ugc-18 mRNA upstream 4833 82149719 ~ 82149795 (+) True trnaa-ugc-18
XM_036981136.1 mRNA upstream 47176 82022011 ~ 82107452 (+) False LOC118964938
XM_036981145.1 mRNA downstream 3624 82158612 ~ 82198550 (+) False LOC110526975
XM_021607808.2 mRNA downstream 96864 82251852 ~ 82253308 (+) True LOC110526669
XM_036981788.1 mRNA downstream 121069 82276057 ~ 82276380 (+) True LOC118965047
XM_036981151.1 mRNA downstream 152556 82307544 ~ 82318126 (+) False vps33b
XM_036981153.1 mRNA downstream 152556 82307544 ~ 82318126 (+) False vps33b
TU624849 other upstream 94213 82022051 ~ 82060415 (+) False LOC118964938
TU624850 other upstream 108230 82022051 ~ 82046398 (+) True LOC118964938
TU624714 other upstream 294370 81856901 ~ 81860258 (+) True LOC110506150
TU624715 other upstream 298437 81849668 ~ 81856191 (+) False LOC110506150
TU624716 other upstream 305038 81844917 ~ 81849590 (+) False LOC110506150
TU624844 other downstream 40347 82195335 ~ 82197668 (+) True LOC110526975
TU624931 other downstream 109981 82264969 ~ 82265749 (+) True G551805
TU625026 other downstream 321930 82476918 ~ 82483802 (+) False G551889
TU625028 other downstream 324585 82479573 ~ 82483802 (+) False G551889
TU625030 other downstream 324585 82479573 ~ 82483802 (+) True G551889

Expression Profile