RNA id: TU624996


Basic Information

Item Value
RNA id TU624996
length 496
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G551865
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 82421625 ~ 82422120 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

Atcaggtactaaacgatatcataaccgccatcgataaaagacagtactgtgcagccgtcttcatcgacctggccaaggctttcgactctgtcaatcactgtattcttatcggcagactcaatagccttggtttttctaatgactgcctcgcctggttcaccaactactttgcagacagagttcagtgtgtcaaatcggagggcatgttgtccggacccctggcagtctctatgggggtaccacagggttcaattctcgggccgactctcttctctgtatatatcaatgatgtcacttttgctgcgggcgattcccaaatccacctctacgcagacgacaccattctttatacttctggcccttccttggacactgtgctaactaacctccaaacgagcttcaatgccatacaacactccttccgtggcctccaaatgttcttaaacgctagtaaaaccaaatgcatgcttttcaaccgttcgctgcccgcacccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU624995 lncRNA upstream 9 82421357 ~ 82421616 (+) True G551864
TU624994 lncRNA upstream 381 82420965 ~ 82421244 (+) True G551863
TU624978 lncRNA upstream 30200 82389448 ~ 82391425 (+) True G551851
TU624975 lncRNA upstream 35898 82384917 ~ 82385727 (+) True G551848
TU624930 lncRNA upstream 157519 82263795 ~ 82264106 (+) True G551804
TU625001 lncRNA downstream 2138 82424258 ~ 82426367 (+) True G551868
TU625022 lncRNA downstream 37832 82459952 ~ 82467343 (+) True G551887
TU625040 lncRNA downstream 63613 82485733 ~ 82486243 (+) True G551893
TU625051 lncRNA downstream 85742 82507862 ~ 82508136 (+) True G551904
TU625052 lncRNA downstream 86962 82509082 ~ 82509309 (+) True G551905
XM_036981175.1 mRNA upstream 994 82413517 ~ 82420631 (+) False LOC110526689
XM_036981176.1 mRNA upstream 994 82413517 ~ 82420631 (+) True LOC110526689
XM_021607836.2 mRNA upstream 56232 82362630 ~ 82365393 (+) True LOC110526680
XM_036981170.1 mRNA upstream 65624 82348812 ~ 82356001 (+) False LOC110526684
XR_005052261.1 mRNA downstream 49886 82472006 ~ 82476306 (+) True LOC118964942
XM_036981789.1 mRNA downstream 97134 82519254 ~ 82529744 (+) True LOC118965048
XM_036981183.1 mRNA downstream 110398 82532518 ~ 82603892 (+) False LOC110526694
XM_036981182.1 mRNA downstream 110401 82532521 ~ 82610560 (+) False LOC110526694
XM_036981181.1 mRNA downstream 110404 82532524 ~ 82627600 (+) False LOC110526694
TU624931 other upstream 155876 82264969 ~ 82265749 (+) True G551805
TU624844 other upstream 223957 82195335 ~ 82197668 (+) True LOC110526975
TU624845 other upstream 228066 82129834 ~ 82193559 (+) False LOC110526975
TU624849 other upstream 361210 82022051 ~ 82060415 (+) False LOC118964938
TU625026 other downstream 54798 82476918 ~ 82483802 (+) False G551889
TU625028 other downstream 57453 82479573 ~ 82483802 (+) False G551889
TU625030 other downstream 57453 82479573 ~ 82483802 (+) True G551889
TU625066 other downstream 167417 82589537 ~ 82601043 (+) False LOC110526694
TU625104 other downstream 168448 82590568 ~ 82593162 (+) True G551950

Expression Profile