RNA id: TCONS_00032927


Basic Information

Item Value
RNA id TCONS_00032927
length 421
RNA type mRNA
GC content 0.43
exon number 2
gene id XLOC_016802
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 45139470 ~ 45154622 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCCGGTTATGGGCTCTATCATCCTGGCGCAGAGTGTTTACTTTTTTGAATGCATTGAGTGTATCTGAACGTCACGGTACACGACTGTATGACAGATTTTACTTCACTGTGATGCATTTTATTTTGCCTTCCGAACTAGCCATGCCATTAAATCGCCGGCTGTGTGTAACGGGTTAGAAAACCAGCTGATCTGACTGTACGTTGGAATGAATTATCATTAATATGGATAGCGTTACTGTTCCTGGATATGTCAACATTCTTGTctctaaaacaaataagagtcgACATCACCACATAAGCCGTCTTTGACAGCACTTCTCGTAACGTCAGGTCTGCTTTCCATGGAGACGGACACTGAGCATCATGAGATGTTTGTGGATCTGGATTTTCCAGCAGATGATCCATCACTCTTTTGGGATT

Function

GO:

id name namespace
GO:0032869 cellular response to insulin stimulus biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-110411-137 Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to act upstream of or within cellular response to insulin stimulus. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in obesity; pancreatic cancer; polycystic ovary syndrome; and type 2 diabetes mellitus. Orthologous to human CAPN10 (calpain 10).

Ensembl:

ensembl_id ENSDART00000150002

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032923 lncRNA downstream 53937 45099174 ~ 45099504 (-) True XLOC_016800
TCONS_00033932 lncRNA downstream 55043 45095017 ~ 45098398 (-) True XLOC_016799
TCONS_00033931 lncRNA downstream 86255 45052537 ~ 45067186 (-) True XLOC_016797
TCONS_00033930 lncRNA downstream 107921 45044482 ~ 45045520 (-) True XLOC_016796
TCONS_00033929 lncRNA downstream 590248 44562014 ~ 44563193 (-) True XLOC_016787
TCONS_00033402 lncRNA upstream 70500 45225122 ~ 45226951 (-) False XLOC_016805
TCONS_00033403 lncRNA upstream 70500 45225122 ~ 45227245 (-) True XLOC_016805
TCONS_00033933 lncRNA upstream 258979 45413601 ~ 45415299 (-) True XLOC_016808
TCONS_00033934 lncRNA upstream 273036 45427658 ~ 45442382 (-) False XLOC_016809
TCONS_00033935 lncRNA upstream 277217 45431839 ~ 45440911 (-) False XLOC_016809
TCONS_00032924 mRNA downstream 17823 45116819 ~ 45135618 (-) True XLOC_016801
TCONS_00032921 mRNA downstream 125687 44984509 ~ 45027754 (-) True XLOC_016795
TCONS_00032920 mRNA downstream 181890 44960876 ~ 44971551 (-) True XLOC_016794
TCONS_00032919 mRNA downstream 207347 44943396 ~ 44946094 (-) True XLOC_016793
TCONS_00032915 mRNA downstream 375849 44749903 ~ 44777592 (-) False XLOC_016790
TCONS_00032928 mRNA upstream 18216 45172838 ~ 45191319 (-) True XLOC_016803
TCONS_00032930 mRNA upstream 175830 45330452 ~ 45331115 (-) True XLOC_016806
TCONS_00032931 mRNA upstream 177515 45332137 ~ 45336975 (-) True XLOC_016807
TCONS_00032932 mRNA upstream 336410 45491032 ~ 45510699 (-) False XLOC_016810
TCONS_00032933 mRNA upstream 337118 45491740 ~ 45510223 (-) False XLOC_016810
TCONS_00032922 other downstream 79531 45073794 ~ 45073910 (-) True XLOC_016798
TCONS_00032918 other downstream 378846 44774275 ~ 44774595 (-) True XLOC_016792
TCONS_00032917 other downstream 390066 44763082 ~ 44763375 (-) True XLOC_016791
TCONS_00032916 other downstream 393094 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032911 other downstream 629060 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032929 other upstream 47601 45202223 ~ 45202331 (-) True XLOC_016804
TCONS_00032936 other upstream 352477 45507099 ~ 45510654 (-) True XLOC_016810
TCONS_00032939 other upstream 501522 45656144 ~ 45658746 (-) False XLOC_016813
TCONS_00032940 other upstream 501614 45656236 ~ 45663914 (-) False XLOC_016813
TCONS_00032941 other upstream 504753 45659375 ~ 45663905 (-) False XLOC_016813

Expression Profile

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