RNA id: TCONS_00033934


Basic Information

Item Value
RNA id TCONS_00033934
length 795
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id XLOC_016809
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 45427658 ~ 45448291 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCAGTTTACTGTAGTATTCCTCTCTCCATGTTCACATCAGCTTCATGATTAGCTGTCACACCACCTGTTCAGCAGGACATCACCAAGGTAAAGATGGTTAATGCTGACTAAACTAATCATAATTGCAGATTTGTGAACTAATAAATCAGAATAGAGATGCTCTTACCCAGGTCTCTGAAGAGGTATGGCTCATTATTTCTCAAAGCATAATAAAAGTCTGTTTTCACTCGGTCTCCGCCAGCGTTTAGCGCATCATAGAGCTTTCTCATTTTACCCTGGCTGGTTTTTTCTGCTTTAATCTCTGCGTAGGTTTCATCGTGAATCTTGTTTTTCAGCTCATCTGCTATTGGCATCACTGCTATAACCCTTTGAATAAGGACGGCGCGGTTCCGATCCACAAATTCGGCCTCTGTGCATAAAAAACGCGAATAACATAGGACTATAACATTGCGATTATTTGTAGAGAAACATTTTCTGCATCATTAAACAAATTATGATACATTGTAGTTATTTAACAGTACAAAGAAGAGATTATAGCTTTAAACTACTTTGAAAAGTTGTCAGATCGCGCGCTTTCTCTTACCGTAGTTGCTCATTCTGTTGAATAATGATCATATCTGCAAATAACACGATGATCAGCCAGGCACAAACTTTTAcctcttaatattttaaaagcgCGTCTTAGGCAGCTTTGCAAACGGCAGTCAAGTTTCAACCGAACTAGTTTAATGCAAGGAACTAAAAACGAAAGTAAGTTTTAAACTTCCGTCCTTGTTGACAacgtgtactgtac

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0009798 axis specification biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001707 mesoderm formation biological_process
GO:0001710 mesodermal cell fate commitment biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:1905770 regulation of mesodermal cell differentiation biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0007501 mesodermal cell fate specification biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0001756 somitogenesis biological_process
GO:0001757 somite specification biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0035282 segmentation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0009888 tissue development biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0044237 cellular metabolic process biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1905902 regulation of mesoderm formation biological_process
GO:0009948 anterior/posterior axis specification biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0048333 mesodermal cell differentiation biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0007379 segment specification biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0000578 embryonic axis specification biological_process
GO:0007389 pattern specification process biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0061053 somite development biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0032525 somite rostral/caudal axis specification biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042661 regulation of mesodermal cell fate specification biological_process
GO:2000380 regulation of mesoderm development biological_process
GO:0009790 embryo development biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033933 lncRNA downstream 12359 45413601 ~ 45415299 (-) True XLOC_016808
TCONS_00033403 lncRNA downstream 200413 45225122 ~ 45227245 (-) True XLOC_016805
TCONS_00033402 lncRNA downstream 200707 45225122 ~ 45226951 (-) False XLOC_016805
TCONS_00032923 lncRNA downstream 328154 45099174 ~ 45099504 (-) True XLOC_016800
TCONS_00033932 lncRNA downstream 329260 45095017 ~ 45098398 (-) True XLOC_016799
TCONS_00033937 lncRNA upstream 113798 45556180 ~ 45556664 (-) True XLOC_016811
TCONS_00033938 lncRNA upstream 576979 46019361 ~ 46034111 (-) True XLOC_016816
TCONS_00033406 lncRNA upstream 1420653 46863035 ~ 46865562 (-) True XLOC_016817
TCONS_00033407 lncRNA upstream 1648363 47090745 ~ 47099661 (-) True XLOC_016819
TCONS_00033939 lncRNA upstream 1899389 47341771 ~ 47344826 (-) True XLOC_016821
TCONS_00032931 mRNA downstream 90683 45332137 ~ 45336975 (-) True XLOC_016807
TCONS_00032930 mRNA downstream 96543 45330452 ~ 45331115 (-) True XLOC_016806
TCONS_00032928 mRNA downstream 236339 45172838 ~ 45191319 (-) True XLOC_016803
TCONS_00032927 mRNA downstream 273036 45153441 ~ 45154622 (-) True XLOC_016802
TCONS_00032926 mRNA downstream 274127 45140146 ~ 45153531 (-) False XLOC_016802
TCONS_00032932 mRNA upstream 48650 45491032 ~ 45510699 (-) False XLOC_016810
TCONS_00032933 mRNA upstream 49358 45491740 ~ 45510223 (-) False XLOC_016810
TCONS_00032934 mRNA upstream 57231 45499613 ~ 45510704 (-) False XLOC_016810
TCONS_00032935 mRNA upstream 59913 45502295 ~ 45504798 (-) False XLOC_016810
TCONS_00032937 mRNA upstream 187325 45629707 ~ 45630823 (-) True XLOC_016812
TCONS_00032929 other downstream 225327 45202223 ~ 45202331 (-) True XLOC_016804
TCONS_00032922 other downstream 353748 45073794 ~ 45073910 (-) True XLOC_016798
TCONS_00032918 other downstream 653063 44774275 ~ 44774595 (-) True XLOC_016792
TCONS_00032917 other downstream 664283 44763082 ~ 44763375 (-) True XLOC_016791
TCONS_00032916 other downstream 667311 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032936 other upstream 64717 45507099 ~ 45510654 (-) True XLOC_016810
TCONS_00032939 other upstream 213762 45656144 ~ 45658746 (-) False XLOC_016813
TCONS_00032940 other upstream 213854 45656236 ~ 45663914 (-) False XLOC_016813
TCONS_00032941 other upstream 216993 45659375 ~ 45663905 (-) False XLOC_016813
TCONS_00032942 other upstream 217553 45659935 ~ 45663902 (-) True XLOC_016813