RNA id: TCONS_00032935


Basic Information

Item Value
RNA id TCONS_00032935
length 500
RNA type mRNA
GC content 0.50
exon number 3
gene id XLOC_016810
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 45491032 ~ 45510704 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGTGACGTTGTGTCATGGATAGCTGCCTTGTTGaatgttctttttaaaatcattgcaGTTTGTGGTGCTGTAATTCCTGGTGGAGAGTTTGGTTGATTGGCAGCTTCAGCGggatgtttgtgtgtttggggCGGTTAGTTTTGAAGATTACAACCCTGTCTGAGGACTTTTTAAGGAGGCAACAAAGCAGTTTTAGATGCCTTTCACATGTCCAGTTTTCTTTGATTGTGTGAGACGGGAAGGCACCAGGATGGAGGCGTCCTGTTTGGATCTGGCTCTGGAGGCAGAGCGTCTGTGTAAGGTGGGAGATTACAGCGCCGGTGTTTCGTACTTCGAGGCTGCCATACAGGTTGGCACAGAAGACCTACAGGTTCTAAGCGCCGTCTACAGTCAGCTGGGGAATGCCTACTTCCACCTGCACGACTACAGCAAAGCTCTGGAGTTCCACCACCATGATCTTACACTCACTAGGACCACTGGTGATCGGCTTGGTGAGGC

Function

GO:

id name namespace
GO:0030695 GTPase regulator activity molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-1169 Predicted to enable GTPase regulator activity. Predicted to be located in plasma membrane. Human ortholog(s) of this gene implicated in sensorineural hearing loss. Orthologous to human GPSM2 (G protein signaling modulator 2).

Ensembl:

ensembl_id ENSDART00000131412

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033936 lncRNA downstream 54004 45432582 ~ 45448291 (-) False XLOC_016809
TCONS_00033934 lncRNA downstream 59913 45427658 ~ 45442382 (-) False XLOC_016809
TCONS_00033405 lncRNA downstream 60113 45441007 ~ 45442182 (-) True XLOC_016809
TCONS_00033935 lncRNA downstream 61384 45431839 ~ 45440911 (-) False XLOC_016809
TCONS_00033404 lncRNA downstream 68667 45432582 ~ 45433628 (-) False XLOC_016809
TCONS_00033937 lncRNA upstream 51382 45556180 ~ 45556664 (-) True XLOC_016811
TCONS_00033938 lncRNA upstream 514563 46019361 ~ 46034111 (-) True XLOC_016816
TCONS_00033406 lncRNA upstream 1358237 46863035 ~ 46865562 (-) True XLOC_016817
TCONS_00033407 lncRNA upstream 1585947 47090745 ~ 47099661 (-) True XLOC_016819
TCONS_00033939 lncRNA upstream 1836973 47341771 ~ 47344826 (-) True XLOC_016821
TCONS_00032931 mRNA downstream 165320 45332137 ~ 45336975 (-) True XLOC_016807
TCONS_00032930 mRNA downstream 171180 45330452 ~ 45331115 (-) True XLOC_016806
TCONS_00032928 mRNA downstream 310976 45172838 ~ 45191319 (-) True XLOC_016803
TCONS_00032927 mRNA downstream 347673 45153441 ~ 45154622 (-) True XLOC_016802
TCONS_00032926 mRNA downstream 348764 45140146 ~ 45153531 (-) False XLOC_016802
TCONS_00032937 mRNA upstream 124909 45629707 ~ 45630823 (-) True XLOC_016812
TCONS_00032938 mRNA upstream 150496 45655294 ~ 45663945 (-) False XLOC_016813
TCONS_00032944 mRNA upstream 161348 45666146 ~ 45691128 (-) True XLOC_016814
TCONS_00032946 mRNA upstream 1533605 47038403 ~ 47039762 (-) True XLOC_016818
TCONS_00032958 mRNA upstream 1865525 47370323 ~ 47431205 (-) False XLOC_016824
TCONS_00032929 other downstream 299964 45202223 ~ 45202331 (-) True XLOC_016804
TCONS_00032922 other downstream 428385 45073794 ~ 45073910 (-) True XLOC_016798
TCONS_00032918 other downstream 727700 44774275 ~ 44774595 (-) True XLOC_016792
TCONS_00032917 other downstream 738920 44763082 ~ 44763375 (-) True XLOC_016791
TCONS_00032916 other downstream 741948 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032936 other upstream 2301 45507099 ~ 45510654 (-) True XLOC_016810
TCONS_00032939 other upstream 151346 45656144 ~ 45658746 (-) False XLOC_016813
TCONS_00032940 other upstream 151438 45656236 ~ 45663914 (-) False XLOC_016813
TCONS_00032941 other upstream 154577 45659375 ~ 45663905 (-) False XLOC_016813
TCONS_00032942 other upstream 155137 45659935 ~ 45663902 (-) True XLOC_016813

Expression Profile

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